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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0181.Seq
         (804 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24180.1 68416.m03035 expressed protein contains Pfam domain ...    52   4e-07
At4g10060.1 68417.m01645 expressed protein contains Pfam domain ...    46   3e-05
At1g33700.1 68414.m04167 expressed protein contains Pfam domain ...    43   3e-04
At5g49900.1 68418.m06179 expressed protein contains Pfam domain ...    41   0.001
At3g45130.1 68416.m04871 cycloartenol synthase, putative / 2,3-e...    29   2.7  
At5g47510.1 68418.m05866 SEC14 cytosolic factor family protein /...    29   3.6  
At3g17320.1 68416.m02214 F-box family protein contains F-box dom...    29   3.6  
At2g37975.1 68415.m04661 expressed protein                             28   6.3  
At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family...    28   8.3  

>At3g24180.1 68416.m03035 expressed protein contains Pfam domain
           PF04685: Protein of unknown function, DUF608
          Length = 950

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
 Frame = +1

Query: 88  ASGWTEAVFPQANVRKALKTIFDNNVMKFKGGKMGAVNGFVAEGR--GTCTPSR 243
           AS     +F ++ +R  ++ IFD NVMK KGGKMGAVNG   +G+   TC  SR
Sbjct: 773 ASSGLPPLFEESKIRSTMQKIFDFNVMKTKGGKMGAVNGMHPDGKVDDTCMQSR 826


>At4g10060.1 68417.m01645 expressed protein contains Pfam domain
           PF04685: Protein of unknown function, DUF608
          Length = 912

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 23/58 (39%), Positives = 35/58 (60%)
 Frame = +1

Query: 49  VAIDVFSSTRFLRASGWTEAVFPQANVRKALKTIFDNNVMKFKGGKMGAVNGFVAEGR 222
           +  D  +   + RA G  + +  +  ++KAL+TI++ NVMK KGG  GAVNG   EG+
Sbjct: 708 ILADQLAGQWYARACG-LKPITKEEWIKKALETIYEFNVMKVKGGTRGAVNGMSTEGK 764


>At1g33700.1 68414.m04167 expressed protein contains Pfam domain
           PF04685: Protein of unknown function, DUF608
          Length = 947

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 20/58 (34%), Positives = 35/58 (60%)
 Frame = +1

Query: 49  VAIDVFSSTRFLRASGWTEAVFPQANVRKALKTIFDNNVMKFKGGKMGAVNGFVAEGR 222
           +  D  +   + RA G  + +  +  ++KAL+T++D NVM+ + G  GAVNG + +GR
Sbjct: 745 ILADQMAGQWYARACG-LKPIAKEEWIKKALETVYDFNVMRVRDGTRGAVNGMLPDGR 801


>At5g49900.1 68418.m06179 expressed protein contains Pfam domain
           PF04685: Protein of unknown function, DUF608
          Length = 957

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 22/58 (37%), Positives = 31/58 (53%)
 Frame = +1

Query: 49  VAIDVFSSTRFLRASGWTEAVFPQANVRKALKTIFDNNVMKFKGGKMGAVNGFVAEGR 222
           +  D  +   + RASG    V  +   R AL+ +++ NVMK K GK GAVNG    G+
Sbjct: 753 IQADQLAGQWYARASGLLPIV-DEDKARTALEKVYNYNVMKIKDGKRGAVNGMHPNGK 809


>At3g45130.1 68416.m04871 cycloartenol synthase, putative /
           2,3-epoxysqualene--cycloartenol cyclase, putative /
           (S)-2,3-epoxysqualene mutase, putative 77% similar to
           cycloartenol synthase [SP|P38605|gi:452446] [PMID:
           7505443]; oxidosqualene cyclase  LcOSC2 - Luffa
           cylindrica, EMBL:AB033335
          Length = 748

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 260 WIGVTYGLASLMVYEGNTCIKKMCFF 337
           W G+   LAS   YE + CI+K C F
Sbjct: 611 WFGIKGMLASGKTYESSLCIRKACGF 636


>At5g47510.1 68418.m05866 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein similar to
           phosphatidylinositol transfer-like protein IV
           (GI:14486707) [Lotus japonicus], SEC14 cytosolic factor
           (Phosphatidylinositol/phosphatidylcholine transfer
           protein) (PI/PCTP) (SP:P24859) [Kluyveromyces lactis]
           and to SEC14 cytosolic factor (SP:P53989) [Candida
           glabrata]
          Length = 376

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -1

Query: 111 HRFGPSGRPQ--EPCGREHINGYLKNEITTKIRYANYHI 1
           H+   +GRP   E  G   +N +LK   TT  RY NYHI
Sbjct: 105 HKVDKTGRPIYIERLGMTDLNAFLK--ATTIERYVNYHI 141


>At3g17320.1 68416.m02214 F-box family protein contains F-box domain
           Pfam:PF00646; contains TIGRFAM TIGR01640: F-box protein
           interaction domain
          Length = 409

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = -2

Query: 497 YSYNGCHTLQPETHYCFTTEIGRVVVSTHADSQEVLTFTTSFPLSFVYRGEEFKKNTFF 321
           Y   G  +++P T  C        + S   +S +V+  TT + L F++RG   K NT++
Sbjct: 178 YEDMGDMSVEPRTRVCEFE-----IYSLDTNSWKVIEVTTDWDLCFLHRGVTLKGNTYW 231


>At2g37975.1 68415.m04661 expressed protein
          Length = 78

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 40  VFKVAIDVFSSTRFLRASGWTEAVFPQANVRKALK 144
           +F  A+ + +  RFL   GWT A   Q   R +LK
Sbjct: 12  LFANALAILNEDRFLAPKGWTLAELHQTGKRNSLK 46


>At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family
           protein similar to SP|Q28141 ATP-dependent RNA helicase
           A (Nuclear DNA helicase II) (DEAD-box protein 9) {Bos
           taurus}; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 1015

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 226 CPFLRPQIRSRRPFCPL*TSSRYCRKLFSVLFAHSL 119
           C F    ++S RP C    SS+ CR   S LF+H++
Sbjct: 747 CTFTHT-LQSTRPACKFFASSQGCRNGESCLFSHAM 781


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,466,258
Number of Sequences: 28952
Number of extensions: 395596
Number of successful extensions: 979
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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