BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= pg--0181.Seq (804 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g24180.1 68416.m03035 expressed protein contains Pfam domain ... 52 4e-07 At4g10060.1 68417.m01645 expressed protein contains Pfam domain ... 46 3e-05 At1g33700.1 68414.m04167 expressed protein contains Pfam domain ... 43 3e-04 At5g49900.1 68418.m06179 expressed protein contains Pfam domain ... 41 0.001 At3g45130.1 68416.m04871 cycloartenol synthase, putative / 2,3-e... 29 2.7 At5g47510.1 68418.m05866 SEC14 cytosolic factor family protein /... 29 3.6 At3g17320.1 68416.m02214 F-box family protein contains F-box dom... 29 3.6 At2g37975.1 68415.m04661 expressed protein 28 6.3 At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family... 28 8.3 >At3g24180.1 68416.m03035 expressed protein contains Pfam domain PF04685: Protein of unknown function, DUF608 Length = 950 Score = 52.0 bits (119), Expect = 4e-07 Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 2/54 (3%) Frame = +1 Query: 88 ASGWTEAVFPQANVRKALKTIFDNNVMKFKGGKMGAVNGFVAEGR--GTCTPSR 243 AS +F ++ +R ++ IFD NVMK KGGKMGAVNG +G+ TC SR Sbjct: 773 ASSGLPPLFEESKIRSTMQKIFDFNVMKTKGGKMGAVNGMHPDGKVDDTCMQSR 826 >At4g10060.1 68417.m01645 expressed protein contains Pfam domain PF04685: Protein of unknown function, DUF608 Length = 912 Score = 46.0 bits (104), Expect = 3e-05 Identities = 23/58 (39%), Positives = 35/58 (60%) Frame = +1 Query: 49 VAIDVFSSTRFLRASGWTEAVFPQANVRKALKTIFDNNVMKFKGGKMGAVNGFVAEGR 222 + D + + RA G + + + ++KAL+TI++ NVMK KGG GAVNG EG+ Sbjct: 708 ILADQLAGQWYARACG-LKPITKEEWIKKALETIYEFNVMKVKGGTRGAVNGMSTEGK 764 >At1g33700.1 68414.m04167 expressed protein contains Pfam domain PF04685: Protein of unknown function, DUF608 Length = 947 Score = 42.7 bits (96), Expect = 3e-04 Identities = 20/58 (34%), Positives = 35/58 (60%) Frame = +1 Query: 49 VAIDVFSSTRFLRASGWTEAVFPQANVRKALKTIFDNNVMKFKGGKMGAVNGFVAEGR 222 + D + + RA G + + + ++KAL+T++D NVM+ + G GAVNG + +GR Sbjct: 745 ILADQMAGQWYARACG-LKPIAKEEWIKKALETVYDFNVMRVRDGTRGAVNGMLPDGR 801 >At5g49900.1 68418.m06179 expressed protein contains Pfam domain PF04685: Protein of unknown function, DUF608 Length = 957 Score = 40.7 bits (91), Expect = 0.001 Identities = 22/58 (37%), Positives = 31/58 (53%) Frame = +1 Query: 49 VAIDVFSSTRFLRASGWTEAVFPQANVRKALKTIFDNNVMKFKGGKMGAVNGFVAEGR 222 + D + + RASG V + R AL+ +++ NVMK K GK GAVNG G+ Sbjct: 753 IQADQLAGQWYARASGLLPIV-DEDKARTALEKVYNYNVMKIKDGKRGAVNGMHPNGK 809 >At3g45130.1 68416.m04871 cycloartenol synthase, putative / 2,3-epoxysqualene--cycloartenol cyclase, putative / (S)-2,3-epoxysqualene mutase, putative 77% similar to cycloartenol synthase [SP|P38605|gi:452446] [PMID: 7505443]; oxidosqualene cyclase LcOSC2 - Luffa cylindrica, EMBL:AB033335 Length = 748 Score = 29.5 bits (63), Expect = 2.7 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +2 Query: 260 WIGVTYGLASLMVYEGNTCIKKMCFF 337 W G+ LAS YE + CI+K C F Sbjct: 611 WFGIKGMLASGKTYESSLCIRKACGF 636 >At5g47510.1 68418.m05866 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein similar to phosphatidylinositol transfer-like protein IV (GI:14486707) [Lotus japonicus], SEC14 cytosolic factor (Phosphatidylinositol/phosphatidylcholine transfer protein) (PI/PCTP) (SP:P24859) [Kluyveromyces lactis] and to SEC14 cytosolic factor (SP:P53989) [Candida glabrata] Length = 376 Score = 29.1 bits (62), Expect = 3.6 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%) Frame = -1 Query: 111 HRFGPSGRPQ--EPCGREHINGYLKNEITTKIRYANYHI 1 H+ +GRP E G +N +LK TT RY NYHI Sbjct: 105 HKVDKTGRPIYIERLGMTDLNAFLK--ATTIERYVNYHI 141 >At3g17320.1 68416.m02214 F-box family protein contains F-box domain Pfam:PF00646; contains TIGRFAM TIGR01640: F-box protein interaction domain Length = 409 Score = 29.1 bits (62), Expect = 3.6 Identities = 17/59 (28%), Positives = 29/59 (49%) Frame = -2 Query: 497 YSYNGCHTLQPETHYCFTTEIGRVVVSTHADSQEVLTFTTSFPLSFVYRGEEFKKNTFF 321 Y G +++P T C + S +S +V+ TT + L F++RG K NT++ Sbjct: 178 YEDMGDMSVEPRTRVCEFE-----IYSLDTNSWKVIEVTTDWDLCFLHRGVTLKGNTYW 231 >At2g37975.1 68415.m04661 expressed protein Length = 78 Score = 28.3 bits (60), Expect = 6.3 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +1 Query: 40 VFKVAIDVFSSTRFLRASGWTEAVFPQANVRKALK 144 +F A+ + + RFL GWT A Q R +LK Sbjct: 12 LFANALAILNEDRFLAPKGWTLAELHQTGKRNSLK 46 >At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family protein similar to SP|Q28141 ATP-dependent RNA helicase A (Nuclear DNA helicase II) (DEAD-box protein 9) {Bos taurus}; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) Length = 1015 Score = 27.9 bits (59), Expect = 8.3 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = -3 Query: 226 CPFLRPQIRSRRPFCPL*TSSRYCRKLFSVLFAHSL 119 C F ++S RP C SS+ CR S LF+H++ Sbjct: 747 CTFTHT-LQSTRPACKFFASSQGCRNGESCLFSHAM 781 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,466,258 Number of Sequences: 28952 Number of extensions: 395596 Number of successful extensions: 979 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 940 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 979 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1824072800 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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