Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0179.Seq
(720 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g55770.1 68416.m06197 LIM domain-containing protein similar t... 69 2e-12
At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 69 3e-12
At1g10200.1 68414.m01150 transcription factor LIM, putative stro... 65 5e-11
At3g61230.1 68416.m06852 LIM domain-containing protein similar t... 64 7e-11
At2g39900.1 68415.m04904 LIM domain-containing protein similar t... 63 2e-10
At1g01780.1 68414.m00097 LIM domain-containing protein similar t... 62 5e-10
At5g42950.1 68418.m05236 GYF domain-containing protein contains ... 42 3e-04
At5g17890.1 68418.m02098 LIM domain-containing protein / disease... 42 3e-04
At1g72410.1 68414.m08374 COP1-interacting protein-related simila... 36 0.027
At5g55660.1 68418.m06940 expressed protein similar to unknown pr... 36 0.036
At1g13670.1 68414.m01607 expressed protein 34 0.11
At4g33980.1 68417.m04821 expressed protein 33 0.19
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ... 33 0.19
At5g54095.1 68418.m06735 expressed protein 32 0.44
At3g57120.1 68416.m06359 protein kinase family protein contains ... 31 0.58
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 31 0.58
At1g55325.1 68414.m06320 expressed protein 31 0.77
At5g66610.1 68418.m08396 LIM domain-containing protein contains ... 31 1.0
At4g36860.1 68417.m05226 LIM domain-containing protein low simil... 31 1.0
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 31 1.0
At2g22610.1 68415.m02680 kinesin motor protein-related 30 1.3
At1g20730.1 68414.m02597 expressed protein contains TIGRFAM TIGR... 30 1.3
At1g13030.1 68414.m01511 sphere organelles protein-related conta... 30 1.3
At1g10530.1 68414.m01186 expressed protein 30 1.3
At1g02990.2 68414.m00269 expressed protein similar to mature-par... 30 1.3
At1g02990.1 68414.m00270 expressed protein similar to mature-par... 30 1.3
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 30 1.8
At1g70620.2 68414.m08137 cyclin-related contains weak similarity... 30 1.8
At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 30 1.8
At1g58270.1 68414.m06628 meprin and TRAF homology domain-contain... 30 1.8
At1g56460.1 68414.m06493 PAPA-1-like family protein / zinc finge... 30 1.8
At1g21200.1 68414.m02650 expressed protein 30 1.8
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 29 2.3
At4g20880.1 68417.m03028 ethylene-responsive nuclear protein / e... 29 2.3
At5g66630.1 68418.m08398 LIM domain-containing protein contains ... 29 3.1
At4g27595.1 68417.m03964 protein transport protein-related low s... 29 3.1
At3g15790.1 68416.m01999 methyl-CpG-binding domain-containing pr... 29 3.1
At4g09150.1 68417.m01515 T-complex protein 11 contains Pfam PF05... 29 4.1
At1g17970.1 68414.m02223 zinc finger (C3HC4-type RING finger) fa... 29 4.1
At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding ... 28 5.4
At5g13340.1 68418.m01535 expressed protein 28 5.4
At4g31880.1 68417.m04531 expressed protein 28 5.4
At3g08670.1 68416.m01007 expressed protein 28 5.4
At2g36810.1 68415.m04514 expressed protein 28 5.4
At2g15760.1 68415.m01804 calmodulin-binding protein similar to A... 28 5.4
At1g56110.1 68414.m06443 nucleolar protein Nop56, putative simil... 28 5.4
At1g17580.1 68414.m02165 myosin, putative similar to myosin GI:4... 28 5.4
At1g04730.1 68414.m00469 AAA-type ATPase family protein contains... 28 5.4
At5g64540.1 68418.m08111 hypothetical protein 28 7.2
At5g48880.2 68418.m06047 acetyl-CoA C-acyltransferase 1 / 3-keto... 28 7.2
At5g48880.1 68418.m06046 acetyl-CoA C-acyltransferase 1 / 3-keto... 28 7.2
At5g28650.1 68418.m03508 WRKY family transcription factor DNA-bi... 28 7.2
At5g19950.3 68418.m02375 expressed protein 28 7.2
At5g19950.2 68418.m02374 expressed protein 28 7.2
At5g19950.1 68418.m02373 expressed protein 28 7.2
At3g53320.1 68416.m05883 expressed protein 28 7.2
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 28 7.2
At2g35540.1 68415.m04353 DNAJ heat shock N-terminal domain-conta... 28 7.2
At2g18650.1 68415.m02173 zinc finger (C3HC4-type RING finger) fa... 28 7.2
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 28 7.2
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 28 7.2
At5g66620.1 68418.m08397 LIM domain-containing protein contains ... 27 9.5
At3g28790.1 68416.m03593 expressed protein 27 9.5
At2g43220.1 68415.m05372 DC1 domain-containing protein contains ... 27 9.5
At2g27860.1 68415.m03377 expressed protein 27 9.5
At1g56520.1 68414.m06499 disease resistance protein (TIR-NBS-LRR... 27 9.5
At1g03280.1 68414.m00306 transcription initiation factor IIE (TF... 27 9.5
>At3g55770.1 68416.m06197 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 199
Score = 69.3 bits (162), Expect = 2e-12
Identities = 26/59 (44%), Positives = 38/59 (64%)
Frame = +3
Query: 297 KCEKCARPVYAMERIKAERRVWHKDCFRCVQCNKQLTVETYQSDHTTLYCKPHFKHLFE 473
KC+ C + VYA+E + A+ +HK CF+C C +L + +Y S LYCKPHF+ LF+
Sbjct: 9 KCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPHFEQLFK 67
Score = 57.2 bits (132), Expect = 1e-08
Identities = 22/61 (36%), Positives = 34/61 (55%)
Frame = +3
Query: 297 KCEKCARPVYAMERIKAERRVWHKDCFRCVQCNKQLTVETYQSDHTTLYCKPHFKHLFEP 476
KC C++ VY +E++ E + +HK CF+C ++ Y + LYCK HF LF+
Sbjct: 107 KCATCSKTVYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKE 166
Query: 477 K 479
K
Sbjct: 167 K 167
>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 226
Score = 68.9 bits (161), Expect = 3e-12
Identities = 26/59 (44%), Positives = 34/59 (57%)
Frame = +3
Query: 297 KCEKCARPVYAMERIKAERRVWHKDCFRCVQCNKQLTVETYQSDHTTLYCKPHFKHLFE 473
KC+ C + VY M+ + E +HK CFRC C L + Y S LYCKPHF+ LF+
Sbjct: 9 KCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKPHFEQLFK 67
Score = 60.5 bits (140), Expect = 1e-09
Identities = 26/61 (42%), Positives = 33/61 (54%)
Frame = +3
Query: 297 KCEKCARPVYAMERIKAERRVWHKDCFRCVQCNKQLTVETYQSDHTTLYCKPHFKHLFEP 476
KC C + VY +E++ E +HK CFRC LT +Y S + LYCK HF LF
Sbjct: 105 KCATCKKTVYPLEKVTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLE 164
Query: 477 K 479
K
Sbjct: 165 K 165
>At1g10200.1 68414.m01150 transcription factor LIM, putative strong
similarity to transcription factor Ntlim1 [Nicotiana
tabacum] GI:5689136, LIM domain protein WLIM-1
[Helianthus annuus] GI:5070280; contains Pfam profile
PF00412: LIM domain
Length = 190
Score = 64.9 bits (151), Expect = 5e-11
Identities = 25/59 (42%), Positives = 35/59 (59%)
Frame = +3
Query: 297 KCEKCARPVYAMERIKAERRVWHKDCFRCVQCNKQLTVETYQSDHTTLYCKPHFKHLFE 473
KC C + VY ++++ A+ RV+HK CFRC C L + Y S LYC+PHF F+
Sbjct: 9 KCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQNFK 67
Score = 49.6 bits (113), Expect = 2e-06
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +3
Query: 282 GESNPKCEKCARPVYAMERIKAERRVWHKDCFRCVQCNKQLTVETYQSDHTTLYCKPHFK 461
G + KC C + VY +E++ ++HK CF+C ++ Y + LYCK H
Sbjct: 104 GGTREKCVGCDKTVYPIEKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYCKHHHI 163
Query: 462 HLFEPK 479
L + K
Sbjct: 164 QLIKEK 169
>At3g61230.1 68416.m06852 LIM domain-containing protein similar to
SP|P29675 Pollen specific protein SF3 {Helianthus
annuus}; contains Pfam profile PF00412: LIM domain
Length = 213
Score = 64.5 bits (150), Expect = 7e-11
Identities = 29/68 (42%), Positives = 39/68 (57%)
Frame = +3
Query: 270 AASDGESNPKCEKCARPVYAMERIKAERRVWHKDCFRCVQCNKQLTVETYQSDHTTLYCK 449
AA G ++ KC+ C + VY M+ + E +HK CFRC CN L + Y S LYCK
Sbjct: 2 AAFTGTTD-KCKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTLVICNYSSMDGVLYCK 60
Query: 450 PHFKHLFE 473
HF+ LF+
Sbjct: 61 THFEQLFK 68
Score = 57.6 bits (133), Expect = 8e-09
Identities = 25/61 (40%), Positives = 32/61 (52%)
Frame = +3
Query: 297 KCEKCARPVYAMERIKAERRVWHKDCFRCVQCNKQLTVETYQSDHTTLYCKPHFKHLFEP 476
KC C + VY +E++ E +HK CFRC LT +Y + LYCK HF LF
Sbjct: 106 KCAACKKTVYPLEKMTMEGESYHKTCFRCAHSGCPLTHSSYAALDGVLYCKVHFSQLFLE 165
Query: 477 K 479
K
Sbjct: 166 K 166
>At2g39900.1 68415.m04904 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 200
Score = 62.9 bits (146), Expect = 2e-10
Identities = 23/59 (38%), Positives = 35/59 (59%)
Frame = +3
Query: 297 KCEKCARPVYAMERIKAERRVWHKDCFRCVQCNKQLTVETYQSDHTTLYCKPHFKHLFE 473
KC C + VY +E + A+ +HK CF+C C +L + Y S +YC+PHF+ LF+
Sbjct: 9 KCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRPHFEQLFK 67
Score = 56.4 bits (130), Expect = 2e-08
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +3
Query: 297 KCEKCARPVYAMERIKAERRVWHKDCFRCVQCNKQLTVETYQSDHTTLYCKPHFKHLFEP 476
KC C + VY +E++ E + +HK CF+C ++ Y + LYCK HF LF+
Sbjct: 108 KCATCTKTVYPIEKVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKE 167
Query: 477 K 479
K
Sbjct: 168 K 168
>At1g01780.1 68414.m00097 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 205
Score = 61.7 bits (143), Expect = 5e-10
Identities = 24/59 (40%), Positives = 32/59 (54%)
Frame = +3
Query: 297 KCEKCARPVYAMERIKAERRVWHKDCFRCVQCNKQLTVETYQSDHTTLYCKPHFKHLFE 473
KC C + VY ++ + E +HK CFRC C L + Y S LYCK HF+ LF+
Sbjct: 9 KCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKTHFEQLFK 67
Score = 60.5 bits (140), Expect = 1e-09
Identities = 26/61 (42%), Positives = 34/61 (55%)
Frame = +3
Query: 297 KCEKCARPVYAMERIKAERRVWHKDCFRCVQCNKQLTVETYQSDHTTLYCKPHFKHLFEP 476
KC C + VY +E+I+ E +HK CFRC LT +Y S + LYC+ HF LF
Sbjct: 103 KCAACEKTVYPLEKIQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFME 162
Query: 477 K 479
K
Sbjct: 163 K 163
>At5g42950.1 68418.m05236 GYF domain-containing protein contains Pfam
profile: PF02213 GYF domain
Length = 1714
Score = 42.3 bits (95), Expect = 3e-04
Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 2/166 (1%)
Frame = +1
Query: 64 EKNNGARTAKATMESQNLIQTESRVQHSYQEVVTEQRQIKKKSKSTRRHKDEGSISVSKS 243
E + TA +ES+ L++ +S+ ++ + V+ + + ++ +T ++ S++ K+
Sbjct: 1048 ESSTATMTAPEIVESK-LLEEQSKDMYAGKGEVSIE--LSGETPATEVKNNDVSVA-RKT 1103
Query: 244 SEKITRKSRPPRTGNRTRSARSAPVPST--PWRGSRLSGESGTRTASDAYSATNNSQWRL 417
SEK +RK R + + +S AP+ T P GS E +T A + +N L
Sbjct: 1104 SEKKSRKQRAKQAADLAKSTSRAPLQETKKPQPGSADDSEIKGKTKKSADTLIDNDT-HL 1162
Query: 418 TRATTRPCTASLTSSICSNPNLSKMTTRLMRTEETPNDNLREQPGR 555
+++T TAS TS + S + +R EE+ N R QPGR
Sbjct: 1163 IKSST--ATASNTSQMSSEVD-------SVRGEESSLQNTRTQPGR 1199
>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
resistance protein-related low similarity to disease
resistance protein RPP4 [Arabidopsis thaliana]
GI:20270890; contains Pfam profiles PF00412: LIM domain,
PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1613
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +3
Query: 285 ESNP---KCEKCARPVYAMERIKAERRVWHKDCFRCVQCNKQLTVETYQSDHTTLYCKPH 455
E NP KC+ C + I A VWH CF C++C + + + SD +Y KP
Sbjct: 1232 EVNPPLSKCKDCKSAIEDGISINAYGSVWHPQCFCCLRCREPIAMNEI-SDLRGMYHKPC 1290
Query: 456 FKHLFEP 476
+K L P
Sbjct: 1291 YKELRHP 1297
>At1g72410.1 68414.m08374 COP1-interacting protein-related similar to
COP1-Interacting ProteinI 7 (CIP7) [Arabidopsis thaliana]
GI:3327870
Length = 1163
Score = 35.9 bits (79), Expect = 0.027
Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 3/162 (1%)
Frame = +1
Query: 73 NGARTAKATMESQNLIQTESRVQHSYQEVVTEQRQIKKKSKSTRRHKDEGSISVSKSSEK 252
+ R S N + + Q E ++EQ+ + K K+ + GSIS S +
Sbjct: 718 SSTRQRAEKFRSFNSRSSMKKYQSEEDEDISEQKP-RAKDKAASGQQSVGSISSRSSQAR 776
Query: 253 ITRKSRPPRTGNRTRSARSAPVPSTPWRGSRLSGESGTRTASD---AYSATNNSQWRLTR 423
+ +R + RSA S P PS ++S S R SD A S N S+ L +
Sbjct: 777 KLQPNRNMSSSITPRSAASVPKPS-----GKVSNTSSGRRRSDKSLAQSVPNFSE--LIK 829
Query: 424 ATTRPCTASLTSSICSNPNLSKMTTRLMRTEETPNDNLREQP 549
T+P + ++ +++ S S RT+ D L ++P
Sbjct: 830 ENTKPSSLAVKTTMRSQVKSSG------RTKNIKEDTLLQRP 865
>At5g55660.1 68418.m06940 expressed protein similar to unknown
protein (pir||T08929)
Length = 778
Score = 35.5 bits (78), Expect = 0.036
Identities = 23/85 (27%), Positives = 43/85 (50%)
Frame = +1
Query: 49 IRNKPEKNNGARTAKATMESQNLIQTESRVQHSYQEVVTEQRQIKKKSKSTRRHKDEGSI 228
+ + E+N K+ E+ L ++E V+ S +E E ++ K+ S+++ K+
Sbjct: 545 VEEEEEENENGIPDKSEDEAPQLSESEENVE-SEEESEEETKKKKRGSRTSSDKKESAGK 603
Query: 229 SVSKSSEKITRKSRPPRTGNRTRSA 303
S SK + + KS PP+ + RSA
Sbjct: 604 SRSKKTA-VPTKSSPPKKATQKRSA 627
>At1g13670.1 68414.m01607 expressed protein
Length = 225
Score = 33.9 bits (74), Expect = 0.11
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 12/108 (11%)
Frame = +1
Query: 130 SRVQHSYQEVVTEQRQIKKKSKSTRRHKDEGSISVSKSSEK-ITRKSRPP---------R 279
SR+Q Q +VTE RQ K+ T H + + V K +K +TR R
Sbjct: 49 SRIQIQKQSIVTENRQ-KRVHPETEEHLPKPRVVVIKPQKKEMTRGGGKKLTSFLNSLLR 107
Query: 280 TGNRTRSARSAPVPSTPWRGSRLSGES--GTRTASDAYSATNNSQWRL 417
+ + ++SAP TP R R+ +S T A+DA TN W L
Sbjct: 108 SAGLKKKSKSAPEVETP-RVERMRRKSCVVTTHAADASPLTNAGAWSL 154
>At4g33980.1 68417.m04821 expressed protein
Length = 218
Score = 33.1 bits (72), Expect = 0.19
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = +1
Query: 49 IRNKPEKNNGARTAKATMESQNLIQTESRVQHSYQEVVTEQRQIKKKSKSTRRHKDEGSI 228
+RNKPE +NG T T++ L E++ + + E+ + ++K + +++ + E +
Sbjct: 139 LRNKPENSNGNYTMGTTVQGDVLCHDETKHSEASGQNFREEEEEEEKGEVSKKREREANN 198
Query: 229 SVS--KSSEKITRKSRPPRT 282
S K + + + PRT
Sbjct: 199 DDSSLKEDQVVPVRMVKPRT 218
>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
protein / LIM domain-containing protein weak similarity
to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
[Mus musculus] GI:664955; contains Pfam profiles
PF02809: Ubiquitin interaction motif, PF00412: LIM
domain
Length = 532
Score = 33.1 bits (72), Expect = 0.19
Identities = 12/60 (20%), Positives = 26/60 (43%)
Frame = +3
Query: 300 CEKCARPVYAMERIKAERRVWHKDCFRCVQCNKQLTVETYQSDHTTLYCKPHFKHLFEPK 479
C C + + +WH +CFRC C++ ++ + + + K ++ + PK
Sbjct: 172 CAGCNMEIGHGRFLNCLNSLWHPECFRCYGCSQPISEYEFSTSGNYPFHKACYRERYHPK 231
>At5g54095.1 68418.m06735 expressed protein
Length = 135
Score = 31.9 bits (69), Expect = 0.44
Identities = 15/41 (36%), Positives = 28/41 (68%)
Frame = +1
Query: 55 NKPEKNNGARTAKATMESQNLIQTESRVQHSYQEVVTEQRQ 177
+KP++++ T K +ES+N ++TE+ Q EVVTE+++
Sbjct: 6 SKPKESDIPETEKTVVESKN-VETETVSQEKADEVVTEKKE 45
>At3g57120.1 68416.m06359 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 456
Score = 31.5 bits (68), Expect = 0.58
Identities = 27/115 (23%), Positives = 49/115 (42%)
Frame = +1
Query: 226 ISVSKSSEKITRKSRPPRTGNRTRSARSAPVPSTPWRGSRLSGESGTRTASDAYSATNNS 405
+ V+ S K TR SRP ++ R S R +P S + + + +T + + S+ S
Sbjct: 23 MGVNASEPKRTR-SRPSQSQGRHPSTRRSPSTSNTGTTTTTTTSNSNKTGASSSSSGAAS 81
Query: 406 QWRLTRATTRPCTASLTSSICSNPNLSKMTTRLMRTEETPNDNLREQPGRTAARC 570
+ +R ASL S+ NP++ ++ T + L + + RC
Sbjct: 82 ----SSVASRTSLASLRESLPENPHIYNVSEIRAATNNFLANRLSSSSSKASWRC 132
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 31.5 bits (68), Expect = 0.58
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Frame = +1
Query: 190 SKSTRRHKDEGSISVSKSSEKITRKSR-PPRTGNRTRSARSAPVPSTPWRGSRLSGESGT 366
+K +R ++G + K+ K R+ PPR G+ +RS P RGSR S T
Sbjct: 173 AKPSRDRPEDGRRADEKNGVKERRRDLIPPRRGDASRS---------PLRGSRSRSISKT 223
Query: 367 RTASDAYSATNNSQWRLTRATTRPCTASLTSSICSNPNLSKMT-TRLMRTEETPNDNLRE 543
+ S +YS R +R+T++ AS++ N + + +R +R +P
Sbjct: 224 NSGSKSYSGE-----RKSRSTSQSSDASISPRKRRLSNSRRRSRSRSVRRSLSPRRRRIH 278
Query: 544 QPGRTAAR 567
P R+ +R
Sbjct: 279 SPFRSRSR 286
>At1g55325.1 68414.m06320 expressed protein
Length = 1921
Score = 31.1 bits (67), Expect = 0.77
Identities = 21/73 (28%), Positives = 30/73 (41%)
Frame = +1
Query: 337 GSRLSGESGTRTASDAYSATNNSQWRLTRATTRPCTASLTSSICSNPNLSKMTTRLMRTE 516
G SG S + S SA++ S WR+T + T A S C L+ RL
Sbjct: 404 GYNSSGSSRNSSISSTSSASSGSGWRMT-SRTGDLDADADSLTCRQSGLTCNDDRLKMGS 462
Query: 517 ETPNDNLREQPGR 555
+ P + E G+
Sbjct: 463 KRPRTGMAESFGQ 475
>At5g66610.1 68418.m08396 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 529
Score = 30.7 bits (66), Expect = 1.0
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +3
Query: 300 CEKCARPVYAMERIKAERRVWHKDCFRCVQCNKQLTVETYQ 422
C+ C + + A WH +CF C C+K + + Y+
Sbjct: 201 CDGCKSAIEYGRSVHALGVNWHPECFCCRYCDKPIAMHEYK 241
>At4g36860.1 68417.m05226 LIM domain-containing protein low
similarity to LIM-domain protein [Branchiostoma
floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
GI:7209525; contains Pfam profile PF00412: LIM domain
Length = 351
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +3
Query: 357 VWHKDCFRCVQCNKQLTVETYQSDHTTLYCKPHFKHLFEPK 479
VWH +CF C C+K + + Y K +K PK
Sbjct: 4 VWHPECFCCNACDKPIIDYEFSMSGNRPYHKLCYKEQHHPK 44
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 30.7 bits (66), Expect = 1.0
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +1
Query: 127 ESRVQHSYQEVVTEQRQIKKKSKSTRRHKDE-GSISVSKSSEKITRKS----RPPRTGNR 291
+ V+H + + + +++S+S RHK E S S S+S K R+S PP
Sbjct: 142 DREVRHRRRSRSRSRSRSERRSRSEHRHKSEHRSRSRSRSRSKSKRRSGFDMAPPDMLAA 201
Query: 292 TRSARSAPVPSTP 330
T A + VPS P
Sbjct: 202 TAVAAAGQVPSVP 214
>At2g22610.1 68415.m02680 kinesin motor protein-related
Length = 1093
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Frame = +1
Query: 100 MESQ-NLIQTESRVQHSYQEVVTEQRQIKKKSKSTRRHKDEGSISVSKSSEKITRKSRPP 276
MES N+++T +R++ + + +KK +++R + E + + EK RKS PP
Sbjct: 985 MESNTNILRTSNRLKTKRHDSLNLNEMTRKK-RASRSGETENNGDDPQMKEKRIRKSDPP 1043
Query: 277 RTGNR-TRSARSA 312
+ +R R R+A
Sbjct: 1044 KVFSRVVRPTRTA 1056
>At1g20730.1 68414.m02597 expressed protein contains TIGRFAM
TIGR01640 : F-box protein interaction domain
Length = 567
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 340 SRLSGESGTRTASDAYSATNNSQWRLTR 423
+RL+ SGT+ Y+ NNS+W LTR
Sbjct: 437 NRLTLISGTKETISVYTLVNNSKWDLTR 464
>At1g13030.1 68414.m01511 sphere organelles protein-related contains
weak similarity to Swiss-Prot:Q09003 sphere organelles
protein SPH-1 (Sphere protein 1) [Xenopus laevis]
Length = 608
Score = 30.3 bits (65), Expect = 1.3
Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 9/141 (6%)
Frame = +1
Query: 52 RNKPEKNNGARTAKATMESQNLIQTESRVQHSYQEVVT-EQRQIKKKSKSTRRHKDEGSI 228
R K K R K +E + L+QT+ V S + V+T + + K+K T ++ +
Sbjct: 262 RRKKAKRQWLRE-KTKLEKEELLQTQLVVAPSQKPVITIDHQATKEKHCETLENQQAEEV 320
Query: 229 SVSKSSEKITRKSRP------PRTGNRTRSARSAP-VPSTPWRGSRLSGESGTRTASDAY 387
S E + + RP P G S S P V + W G+ ++ + G + ++
Sbjct: 321 SDGFGDEVVPVEVRPGHIRFKPLAGTDEASLDSEPLVENVLWNGN-MTKKKGQKWGTEKS 379
Query: 388 SATNN-SQWRLTRATTRPCTA 447
+ +Q ATT+P A
Sbjct: 380 GFSKRYAQDFNEDATTQPAEA 400
>At1g10530.1 68414.m01186 expressed protein
Length = 166
Score = 30.3 bits (65), Expect = 1.3
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
Frame = +1
Query: 64 EKNNGARTAKATMES--QNLIQTESRVQ-HSYQEVVTEQRQIK----KKSKSTRRHKDEG 222
EK + + KA + Q L TE+ V H+Y+ ++T Q +K KKS T++H+ E
Sbjct: 60 EKGDDKKQRKAVRFTRVQLLRPTENLVLGHAYR-LITSQEVMKVLREKKSAKTKKHQIEK 118
Query: 223 SISVSKSSEKITRKSRPPRTGNRTRSARSAPVPSTPWRGSRLSGESGT 366
+ + K S+K + + + R++ S + S WR S S T
Sbjct: 119 TTTAKKFSDKKVPEKKQGKQFRVIRNSTSL-LKSKTWRPSLQSISEAT 165
>At1g02990.2 68414.m00269 expressed protein similar to
mature-parasite-infected erythrocyte surface antigen
(GI:160409) {Plasmodium falciparum}
Length = 1238
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 426 DHTTLYCKPHFKHLFEPKPVEDD 494
DH L C+P KHL +P + +D
Sbjct: 518 DHLNLVCEPDLKHLIKPSDLNED 540
>At1g02990.1 68414.m00270 expressed protein similar to
mature-parasite-infected erythrocyte surface antigen
(GI:160409) {Plasmodium falciparum}
Length = 1069
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 426 DHTTLYCKPHFKHLFEPKPVEDD 494
DH L C+P KHL +P + +D
Sbjct: 518 DHLNLVCEPDLKHLIKPSDLNED 540
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 29.9 bits (64), Expect = 1.8
Identities = 28/103 (27%), Positives = 41/103 (39%)
Frame = +1
Query: 82 RTAKATMESQNLIQTESRVQHSYQEVVTEQRQIKKKSKSTRRHKDEGSISVSKSSEKITR 261
R + A E ++ +ESR + V T R + R H S S+S+S
Sbjct: 110 RRSFAGREITVVVASESRKRPEEMRVKTRTRSREPSGSRDRSHGRSRSRSISRSRS---- 165
Query: 262 KSRPPRTGNRTRSARSAPVPSTPWRGSRLSGESGTRTASDAYS 390
RP + +R RS +P P RG GE + +YS
Sbjct: 166 PRRPSDSRSRYRSRSYSPAPRR--RGGPPRGEEDENYSRRSYS 206
>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide I)
[Bos taurus]
Length = 884
Score = 29.9 bits (64), Expect = 1.8
Identities = 23/79 (29%), Positives = 39/79 (49%)
Frame = +1
Query: 166 EQRQIKKKSKSTRRHKDEGSISVSKSSEKITRKSRPPRTGNRTRSARSAPVPSTPWRGSR 345
E+R ++++++ + K S + ++SS+ RKSR +R RS +PV S R S
Sbjct: 800 EERSRHRRAENSSKDKRRRSPTSNESSDDSKRKSR-----SRRRSVSPSPVRSRRKRSSP 854
Query: 346 LSGESGTRTASDAYSATNN 402
S ES + + S N
Sbjct: 855 SSDESSDDSKRKSSSKRKN 873
>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 897
Score = 29.9 bits (64), Expect = 1.8
Identities = 23/79 (29%), Positives = 39/79 (49%)
Frame = +1
Query: 166 EQRQIKKKSKSTRRHKDEGSISVSKSSEKITRKSRPPRTGNRTRSARSAPVPSTPWRGSR 345
E+R ++++++ + K S + ++SS+ RKSR +R RS +PV S R S
Sbjct: 770 EERSRHRRAENSSKDKRRRSPTSNESSDDSKRKSR-----SRRRSVSPSPVRSRRKRSSP 824
Query: 346 LSGESGTRTASDAYSATNN 402
S ES + + S N
Sbjct: 825 SSDESSDDSKRKSSSKRKN 843
>At1g58270.1 68414.m06628 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 396
Score = 29.9 bits (64), Expect = 1.8
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = +1
Query: 79 ARTAKATMESQNLIQTESRVQHSYQEVVTEQR----QIKKKSKSTRRHKDEGSISVSKSS 246
AR AK + QNLI+TE+ V+ + V K S S R H DE +S + ++
Sbjct: 29 ARFAKPYINLQNLIETEAVVEEGFMAVGNSGNLPCGSSKPSSASVRAH-DEQKLSQAVTT 87
Query: 247 EKITRKSRPPRT 282
+ ++RPP +
Sbjct: 88 D---TRTRPPNS 96
>At1g56460.1 68414.m06493 PAPA-1-like family protein / zinc finger
(HIT type) family protein contains Pfam profile PF04795:
PAPA-1-like conserved region
Length = 502
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +1
Query: 151 QEVVTEQRQIKKKSKSTRRHKDEGSISVSKSSEKITRKSRPPRTGNRTRSARSAPVPSTP 330
+E +++ KS TRR +EG V K+ +T + R +GN R P P+ P
Sbjct: 298 EEEAVSDVELENKSARTRRGAEEGQSEV-KTEMTVTTRRRSGHSGNLIEFPRGLP-PAPP 355
>At1g21200.1 68414.m02650 expressed protein
Length = 443
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +2
Query: 404 HSGDLPERPHDLVLQASLQASVRTQTCXXXXXD*CAPKKHQM 529
H+G+ PHDL LQ SLQ ++R++ D +KHQM
Sbjct: 241 HNGNRLHLPHDLALQRSLQLALRSR----DDHDNDDSRKHQM 278
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +1
Query: 241 SSEKITRKSRPPRTGNRTRSARSAPVPSTPWRGSRLS 351
SS K+T+ NR RS R+ P STP R S
Sbjct: 614 SSTKLTKAEEKNGNSNRLRSLRTFPTKSTPVHALRFS 650
>At4g20880.1 68417.m03028 ethylene-responsive nuclear protein /
ethylene-regulated nuclear protein (ERT2) identical to
ethylene-regulated nuclear protein [Arabidopsis
thaliana] gi|2765442|emb|CAA75349
Length = 405
Score = 29.5 bits (63), Expect = 2.3
Identities = 23/119 (19%), Positives = 50/119 (42%), Gaps = 3/119 (2%)
Frame = +1
Query: 22 KNNIYFYVVIRNKPEKNNGARTAKATMESQNLIQTESRVQHSYQEVV--TEQ-RQIKKKS 192
+NN+YF ++ + E ++ +++E L+ E + + ++V+ TE+ + K KS
Sbjct: 216 RNNVYFEIIEEPREEIRVTPQSDSSSLEKAKLVVDEKKEMQTIRDVMFKTEKSKSAKLKS 275
Query: 193 KSTRRHKDEGSISVSKSSEKITRKSRPPRTGNRTRSARSAPVPSTPWRGSRLSGESGTR 369
K ++ + S K + ++ T S S+ + R+ E R
Sbjct: 276 KIVKKIVPKKLRSYKKKKKMKNKEKEEEEVELETEEEGSMTEVSSLYSDERIGSEISER 334
>At5g66630.1 68418.m08398 LIM domain-containing protein contains low
similarity to Pfam profile PF00412: LIM domain
Length = 702
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/42 (26%), Positives = 18/42 (42%)
Frame = +3
Query: 300 CEKCARPVYAMERIKAERRVWHKDCFRCVQCNKQLTVETYQS 425
C C V E + +WH CF C C+K + + ++
Sbjct: 347 CGGCNSAVKHEESVNILGVLWHPGCFCCRSCDKPIAIHELEN 388
>At4g27595.1 68417.m03964 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1212
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 94 ATMESQNLIQTESRVQHSYQEVVTEQRQIKKKSKSTRRHKDEGSISVSKSSEKI 255
AT + QNL+ ++ + + E+ +IKK +S E S+ ++ EK+
Sbjct: 424 ATSQIQNLLSEKTELATELENCKKEEEKIKKAMESLTLDLQEVSVEAKEAKEKL 477
>At3g15790.1 68416.m01999 methyl-CpG-binding domain-containing
protein contains Pfam profile PF01429: Methyl-CpG
binding domain
Length = 254
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Frame = +1
Query: 55 NKPEKNNGARTAKATMESQNLIQTESRVQHSYQEVVTEQRQ-----IKKKSKSTRRHKDE 219
N +KN T + +N++ E+ QE ++ + KSK T + KD
Sbjct: 142 NVTDKNGSGETERVNDAKENIVAEETPNAAPVQEEGESMKEKALDSVDDKSKETDKEKDT 201
Query: 220 GSISVSKSSEKITRKS 267
GSI K+S + +K+
Sbjct: 202 GSI--EKNSVDVEKKT 215
>At4g09150.1 68417.m01515 T-complex protein 11 contains Pfam
PF05794: T-complex protein 11
Length = 1097
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +1
Query: 202 RRHKDEGSISVSKSSEKITRKSRPPRTGNRTRSARSAPVPSTPWRGSRLS 351
+ HKD S ++ S S RTG S PS+P+ G LS
Sbjct: 839 KEHKDALSAVINNHSGSSGLPSTTMRTGGNVSSVSKVNTPSSPFPGIELS 888
>At1g17970.1 68414.m02223 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 368
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +2
Query: 275 LGRGIEP-EVREVRPSRLRHGEDQG*AE-SLAQGLLPMRTVQQTTHSGDLPERPHDLVLQ 448
+GR ++P R + SR + D +L +LP+R + Q THS D+ V
Sbjct: 161 IGRSVDPPRGRNIPSSRRKIDVDNNNYNHTLGSSVLPIRFLNQETHSHDIFNSDSTFVTS 220
Query: 449 ASLQASVRTQTC 484
+ + ++ + C
Sbjct: 221 SRAEPTMLSSRC 232
>At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding
subunit (ClpD), (ERD1) SAG15/ERD1; identical to ERD1
protein GI:497629, SP:P42762 from [Arabidopsis
thaliana]; contains Pfam profile PF02861: Clp amino
terminal domain
Length = 945
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/75 (21%), Positives = 34/75 (45%)
Frame = +1
Query: 64 EKNNGARTAKATMESQNLIQTESRVQHSYQEVVTEQRQIKKKSKSTRRHKDEGSISVSKS 243
E + AR + ++ I S+ + Y + + + + + S+R+ +D+G +S
Sbjct: 510 EAGSRARIEAFRKKKEDAICILSKPPNDYWQEIKTVQAMHEVVLSSRQKQDDGDAISDES 569
Query: 244 SEKITRKSRPPRTGN 288
E + S PP G+
Sbjct: 570 GELVEESSLPPAAGD 584
>At5g13340.1 68418.m01535 expressed protein
Length = 242
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/83 (22%), Positives = 35/83 (42%)
Frame = +1
Query: 52 RNKPEKNNGARTAKATMESQNLIQTESRVQHSYQEVVTEQRQIKKKSKSTRRHKDEGSIS 231
R K E+ R M +N + E + E+ ++ + ++ + +R K+E +
Sbjct: 152 RRKEEQARREREELDKMLEENSRRVEESQRREAMELQRKEEERYRELELLQRQKEEAARR 211
Query: 232 VSKSSEKITRKSRPPRTGNRTRS 300
E+ R S GNR+RS
Sbjct: 212 KKLEEEEEIRNSSKLSNGNRSRS 234
>At4g31880.1 68417.m04531 expressed protein
Length = 873
Score = 28.3 bits (60), Expect = 5.4
Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 4/119 (3%)
Frame = +1
Query: 187 KSKSTRRHKDEGSISVSKSSEKITRKSRPPRTGNRTRSARSAPVPSTPWRGSRLSGESGT 366
K+ S + E S SSE+ + + PP+T ++ S+RS S+ + + S
Sbjct: 730 KTASKSKDSKEASREEEASSEEESEEEEPPKTVGKSGSSRSKKDISSVSKSGKSKASSKK 789
Query: 367 R---TASDAYSATNNSQWRLTRATTRPCTASLTSSICSNP-NLSKMTTRLMRTEETPND 531
+ + + S + + + A ++ S S P + +K + +EETP +
Sbjct: 790 KEEPSKATTSSKSKSGPVKSVPAKSKTGKGKAKSGSASTPASKAKESASESESEETPKE 848
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 28.3 bits (60), Expect = 5.4
Identities = 26/89 (29%), Positives = 42/89 (47%)
Frame = +1
Query: 226 ISVSKSSEKITRKSRPPRTGNRTRSARSAPVPSTPWRGSRLSGESGTRTASDAYSATNNS 405
+SVS+S E SRP R+ + TR + S S+ G S T +AS + +S
Sbjct: 137 LSVSQS-ESGYHSSRPARSSSVTRPSISTSQYSSFTSGRSPSSILNTSSASVSSYIRPSS 195
Query: 406 QWRLTRATTRPCTASLTSSICSNPNLSKM 492
+ ++ RP T + TSS + S++
Sbjct: 196 PSSRSSSSARPSTPTRTSSASRSSTPSRI 224
>At2g36810.1 68415.m04514 expressed protein
Length = 1071
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +1
Query: 232 VSKSSEKITRKSRPPRTGNRTRSARSAPVPSTPWRGSRLSGESGTRTASDAYS 390
+++S + + R + G RS++S T WRG+RL G R A+D S
Sbjct: 1021 MTRSQDSVVRAACSSAFGLLLRSSKS-----TLWRGARLDGTDSGRKANDLES 1068
>At2g15760.1 68415.m01804 calmodulin-binding protein similar to
AR781 GI:1669593 from [Arabidopsis thaliana]; AR781
complements pheromone receptor deficient mutant of
Shizosaccharomyces pombe
Length = 315
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +1
Query: 241 SSEKITRKSRPPRTGNRTRSARSAPVPST 327
SS IT S P R GN SA ++P PST
Sbjct: 20 SSPYITAPSSPTRFGNNFFSAPTSPSPST 48
>At1g56110.1 68414.m06443 nucleolar protein Nop56, putative similar
to XNop56 protein [Xenopus laevis] GI:14799394; contains
Pfam profile PF01798: Putative snoRNA binding domain
Length = 522
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = +1
Query: 46 VIRNKPEKNNGARTAKATMESQNLIQTESRVQHSYQEVVTEQRQIKKKSKSTRRHKDEGS 225
VI N ++ G A+++ + + + +EVV + +K K + K E +
Sbjct: 427 VIENLKQEEEGKEPVDASVKKSKKKKAKGEEE---EEVVAMEEDKSEKKKKKEKRKMETA 483
Query: 226 ISVSKSSEKITRKSR 270
KS +K T+KS+
Sbjct: 484 EENEKSEKKKTKKSK 498
>At1g17580.1 68414.m02165 myosin, putative similar to myosin GI:433663
from (Arabidopsis thaliana)
Length = 1520
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 139 QHSYQEVVTEQRQIKKKSKSTRRHKDEGSISVSKSSEKI 255
QH+YQ + + ++ KK + R D+ SV + EK+
Sbjct: 996 QHAYQSALVQNEELCKKLEEAGRKIDQLQDSVQRFQEKV 1034
>At1g04730.1 68414.m00469 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 954
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +2
Query: 560 PPDV---VRASDKPDLGLEELASLDVKSRFEVFERAAKGSEEPPPLEHRARARR 712
PP V + KP+ + AS + + F+ F ++ K E+P +++RA A+R
Sbjct: 873 PPSVSVGTATTSKPNSSDVKKASRNALNFFDRFRKSRKDYEDPEDVQNRATAKR 926
>At5g64540.1 68418.m08111 hypothetical protein
Length = 440
Score = 27.9 bits (59), Expect = 7.2
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Frame = +1
Query: 256 TRKSRPP-RTGNRTRSARSAPVPSTPWRGSRLSGESGTRTASDAYSATNNSQWRLTRATT 432
++K PP +GN+T + S VP+TP S T SD+ T S T T
Sbjct: 264 SQKDFPPILSGNQTPTTSSHSVPTTP------SSSQLNTTTSDSPVHTPIS----TTLTV 313
Query: 433 RPCTASLTSSICSNPNLSKMTT--RLMRTEETPNDNL 537
T++ TS+ S+P++ ++ T ++ +P+D L
Sbjct: 314 DLNTSTTTSTHSSSPSVDRLDTVAQIPDLSSSPSDGL 350
>At5g48880.2 68418.m06047 acetyl-CoA C-acyltransferase 1 /
3-ketoacyl-CoA thiolase 1 (PKT1) identical to
3-keto-acyl-CoA-thiolase 1 [Arabidopsis thaliana]
GI:3169568
Length = 457
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 323 DGTGALLALRVRFPVRGGLDFLVIFSELLDTEIDPS 216
DG GA+L ++ ++ GL L +F T ++PS
Sbjct: 297 DGAGAVLLMKRSLAMKKGLPILGVFRSFAVTGVEPS 332
>At5g48880.1 68418.m06046 acetyl-CoA C-acyltransferase 1 /
3-ketoacyl-CoA thiolase 1 (PKT1) identical to
3-keto-acyl-CoA-thiolase 1 [Arabidopsis thaliana]
GI:3169568
Length = 414
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 323 DGTGALLALRVRFPVRGGLDFLVIFSELLDTEIDPS 216
DG GA+L ++ ++ GL L +F T ++PS
Sbjct: 254 DGAGAVLLMKRSLAMKKGLPILGVFRSFAVTGVEPS 289
>At5g28650.1 68418.m03508 WRKY family transcription factor
DNA-binding protein WRKY3, parsley, PIR:S72445
Length = 330
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 148 YQEVVTEQRQIKKKSKSTRRHKDEGSISVSKSSEKITRKSR 270
YQ + T Q+ + +SKS K +GSI S S I+ SR
Sbjct: 141 YQFIHTHQQGVYSRSKSGLNLKFDGSIGASCYSPSISNGSR 181
>At5g19950.3 68418.m02375 expressed protein
Length = 441
Score = 27.9 bits (59), Expect = 7.2
Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 1/109 (0%)
Frame = +1
Query: 115 LIQTESRVQHSYQEVVTEQRQIKKKSKSTRRHKDEGSISVSKSSEKI-TRKSRPPRTGNR 291
L E V Y + +TE+ Q+KKK S R ++ + E++ R R N+
Sbjct: 166 LTPKEVTVLGGYVQSLTEEWQMKKKYASLARSQESKAGDGPPPFEELKIRTGSHHRDYNK 225
Query: 292 TRSARSAPVPSTPWRGSRLSGESGTRTASDAYSATNNSQWRLTRATTRP 438
T S + P+ + GE G + D N + A + P
Sbjct: 226 TTSRNNVPIAAES-SVKHAGGEKGESSEVDGNKRGTNKNIQRNPADSDP 273
>At5g19950.2 68418.m02374 expressed protein
Length = 443
Score = 27.9 bits (59), Expect = 7.2
Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 1/109 (0%)
Frame = +1
Query: 115 LIQTESRVQHSYQEVVTEQRQIKKKSKSTRRHKDEGSISVSKSSEKI-TRKSRPPRTGNR 291
L E V Y + +TE+ Q+KKK S R ++ + E++ R R N+
Sbjct: 166 LTPKEVTVLGGYVQSLTEEWQMKKKYASLARSQESKAGDGPPPFEELKIRTGSHHRDYNK 225
Query: 292 TRSARSAPVPSTPWRGSRLSGESGTRTASDAYSATNNSQWRLTRATTRP 438
T S + P+ + GE G + D N + A + P
Sbjct: 226 TTSRNNVPIAAES-SVKHAGGEKGESSEVDGNKRGTNKNIQRNPADSDP 273
>At5g19950.1 68418.m02373 expressed protein
Length = 443
Score = 27.9 bits (59), Expect = 7.2
Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 1/109 (0%)
Frame = +1
Query: 115 LIQTESRVQHSYQEVVTEQRQIKKKSKSTRRHKDEGSISVSKSSEKI-TRKSRPPRTGNR 291
L E V Y + +TE+ Q+KKK S R ++ + E++ R R N+
Sbjct: 166 LTPKEVTVLGGYVQSLTEEWQMKKKYASLARSQESKAGDGPPPFEELKIRTGSHHRDYNK 225
Query: 292 TRSARSAPVPSTPWRGSRLSGESGTRTASDAYSATNNSQWRLTRATTRP 438
T S + P+ + GE G + D N + A + P
Sbjct: 226 TTSRNNVPIAAES-SVKHAGGEKGESSEVDGNKRGTNKNIQRNPADSDP 273
>At3g53320.1 68416.m05883 expressed protein
Length = 553
Score = 27.9 bits (59), Expect = 7.2
Identities = 22/82 (26%), Positives = 37/82 (45%)
Frame = +1
Query: 178 IKKKSKSTRRHKDEGSISVSKSSEKITRKSRPPRTGNRTRSARSAPVPSTPWRGSRLSGE 357
IKKK+ S+ R + + S S + + PP+ N+T + + S P GS
Sbjct: 346 IKKKNDSSSRLSSQPLANRSTSRGIMGQPRIPPQQTNKTSKPKLS--SSVPTAGSISDYS 403
Query: 358 SGTRTASDAYSATNNSQWRLTR 423
S + AS+ N +Q ++R
Sbjct: 404 SESSRASETSKMANGNQKTVSR 425
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 27.9 bits (59), Expect = 7.2
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Frame = +1
Query: 37 FYVVIRNKPEKNNGARTAKATMESQNLIQTESRVQ-HSYQEVVTEQRQIKKK-SKSTRRH 210
F V + + ++ +++ S++ ++ R + HS ++ + +K SKS RR
Sbjct: 192 FIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDLSKSPRRS 251
Query: 211 KDEGSISVSKSSEKITRKSRP---PRTGNRTRSARSAPVPSTP 330
SIS S+S +KS P R+ +R+RS +P S P
Sbjct: 252 LSR-SISKSRSPSPDKKKSPPRAMSRSKSRSRSRSRSPSKSPP 293
>At2g35540.1 68415.m04353 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile PF00226:
DnaJ domain
Length = 575
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = +1
Query: 64 EKNNGARTAKATMESQNLIQT----ESRVQHSYQEVVTEQRQIKKKSKSTRRHKDEGSIS 231
E+N G T K ++ ++ +T + ++ QEV+ ++ IKKK + HKD I
Sbjct: 269 EENMGRETQKRSLADASMTETLREMSTNAVNNKQEVLKNRKNIKKKKMA--NHKDLTEIV 326
Query: 232 VSKSSEKITRK 264
+ ++ RK
Sbjct: 327 DLEYVPRVDRK 337
>At2g18650.1 68415.m02173 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHX1a
[Arabidopsis thaliana] GI:3790591; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 423
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +1
Query: 376 SDAYSATNNSQWRLTRATTRPCTASLTSSICSNPNLSKMTTRLMRTEETPND 531
S A+ W L+ +T C ++L S S+ NLS ++ +E++ D
Sbjct: 146 SHAFHVECIDTWLLSHSTCPLCRSNLLSGFSSHHNLSSSYLLVLESEQSSRD 197
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 27.9 bits (59), Expect = 7.2
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +1
Query: 124 TESRVQHSYQEVVTEQRQIKKKSKSTRRHKDEGSISVSKSSEKITR-KSRPPRTGNRTRS 300
++SR + + V + + + +S+S + S + S S R KSR P + R+RS
Sbjct: 211 SKSRSRSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSRSP-SPRRSRS 269
Query: 301 ARSAPVPSTPWRGSR 345
+P+PS GS+
Sbjct: 270 RSRSPLPSVQKEGSK 284
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 27.9 bits (59), Expect = 7.2
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +1
Query: 124 TESRVQHSYQEVVTEQRQIKKKSKSTRRHKDEGSISVSKSSEKITR-KSRPPRTGNRTRS 300
++SR + + V + + + +S+S + S + S S R KSR P + R+RS
Sbjct: 211 SKSRSRSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSRSP-SPRRSRS 269
Query: 301 ARSAPVPSTPWRGSR 345
+P+PS GS+
Sbjct: 270 RSRSPLPSVQKEGSK 284
>At5g66620.1 68418.m08397 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 644
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = +3
Query: 285 ESNPKCEKCARPVYAMER---IKAERRVWHKDCFRCVQCNKQLTVETYQS 425
E NP C +A+E + +WH CF C C+K + + ++
Sbjct: 278 ELNPPPSLCGGCNFAVEHGGSVNILGVLWHPGCFCCRACHKPIAIHDIEN 327
>At3g28790.1 68416.m03593 expressed protein
Length = 608
Score = 27.5 bits (58), Expect = 9.5
Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 7/127 (5%)
Frame = +1
Query: 163 TEQRQIKKKS--KSTRRHKDEGSISVSKSSEK-----ITRKSRPPRTGNRTRSARSAPVP 321
+E +KK+S KS GS+S +K + K + + +G+ + S +P P
Sbjct: 326 SESASMKKESNSKSESESAASGSVSKTKETNKGSSGDTYKDTTGTSSGSPSGSPSGSPTP 385
Query: 322 STPWRGSRLSGESGTRTASDAYSATNNSQWRLTRATTRPCTASLTSSICSNPNLSKMTTR 501
ST G S S + +A + SA+ + A+ AS S + S +T
Sbjct: 386 STSTDGKASSKGSASASAGASASASAGAS-----ASAEESAASQKKESNSKSSSSSSSTT 440
Query: 502 LMRTEET 522
++ ET
Sbjct: 441 SVKEVET 447
>At2g43220.1 68415.m05372 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 538
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +3
Query: 279 DGESNPKCEKCARPVYAMERIKAE--RRVWHKDC 374
DG + CE CARPV + + K + + H++C
Sbjct: 273 DGAEDMHCEACARPVSSEKHYKCVECKFILHEEC 306
>At2g27860.1 68415.m03377 expressed protein
Length = 389
Score = 27.5 bits (58), Expect = 9.5
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +3
Query: 390 CNKQLTVETYQSDHTTLYCKPHFKHLFEPKPVEDDDEIDAHRRNTK 527
C K LT ++ +Y KHL EP VE I HR N K
Sbjct: 34 CEKLLTETPHKVLALDVY-NDKIKHLLEPDTVEWSGRIQFHRINIK 78
>At1g56520.1 68414.m06499 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 897
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 424 ATTRPCTASLTSSICSNPNLSKMTTRL 504
A+ R CT T ICSN NL +T L
Sbjct: 733 ASFRHCTGVTTLYICSNRNLKTFSTHL 759
>At1g03280.1 68414.m00306 transcription initiation factor IIE
(TFIIE) alpha subunit family protein / general
transcription factor TFIIE family protein contains Pfam
profile: PF02002 TFIIE alpha subunit
Length = 479
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 300 CEKCARPVYAMERIKAERRVWHKDCFRCVQCNKQLTVE 413
C C R A++ ++ V D F C CN +L VE
Sbjct: 168 CPNCQRKYNALDALRLISMV--DDSFHCENCNGELVVE 203
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.312 0.121 0.341
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,727,782
Number of Sequences: 28952
Number of extensions: 361186
Number of successful extensions: 1175
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
- SilkBase 1999-2023 -