Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0178.Seq
(732 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY293621-1|AAP46162.1| 392|Tribolium castaneum glass protein pr... 33 0.002
AF442747-1|AAL40947.1| 669|Tribolium castaneum ABC transmembran... 33 0.002
AF422804-1|AAL56571.1| 669|Tribolium castaneum ABC transmembran... 33 0.002
AF227923-1|AAF36721.1| 351|Tribolium castaneum abdominal-B prot... 25 0.63
AY362544-1|AAQ63456.1| 268|Tribolium castaneum chitin synthase ... 24 1.5
AY362543-1|AAQ63455.1| 677|Tribolium castaneum chitin synthase ... 24 1.5
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ... 24 1.5
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ... 24 1.5
U77974-1|AAB36556.1| 276|Tribolium castaneum transcription fact... 23 1.9
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr... 23 3.4
>AY293621-1|AAP46162.1| 392|Tribolium castaneum glass protein
protein.
Length = 392
Score = 33.5 bits (73), Expect = 0.002
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 432 APSRRPRCAPTSASCRKTRCSSTTPLIQHSIRKIERARR*YNICR-QERGHSRPNTDVSR 608
A R P+ P AS + S ++P +HSI +E + N+CR + ++RP+T +
Sbjct: 209 ADFRPPQETPVLASYKSVPMSFSSPRRRHSINLLEEDNQKPNVCRICGKSYARPSTLKTH 268
Query: 609 RLRHAG 626
H+G
Sbjct: 269 LRTHSG 274
>AF442747-1|AAL40947.1| 669|Tribolium castaneum ABC transmembrane
transporter protein.
Length = 669
Score = 33.5 bits (73), Expect = 0.002
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +1
Query: 646 LSGGEKQRIAIARTILKDPAIVLLDEATS 732
+SGGEK+R++ A +L +P ++ DE TS
Sbjct: 220 ISGGEKKRLSFAAEVLTNPKLMFCDEPTS 248
Score = 29.5 bits (63), Expect = 0.029
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 281 VLNNISFKIAPGSTVALVGPIGAGKSTIMRLL 376
+L N+ PG +A++G GAGK+T++ L
Sbjct: 93 ILKNVFGVAYPGELLAILGSSGAGKTTLLNTL 124
>AF422804-1|AAL56571.1| 669|Tribolium castaneum ABC transmembrane
transporter white protein.
Length = 669
Score = 33.5 bits (73), Expect = 0.002
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +1
Query: 646 LSGGEKQRIAIARTILKDPAIVLLDEATS 732
+SGGEK+R++ A +L +P ++ DE TS
Sbjct: 220 ISGGEKKRLSFAAEVLTNPKLMFCDEPTS 248
Score = 29.5 bits (63), Expect = 0.029
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 281 VLNNISFKIAPGSTVALVGPIGAGKSTIMRLL 376
+L N+ PG +A++G GAGK+T++ L
Sbjct: 93 ILKNVFGVAYPGELLAILGSSGAGKTTLLNTL 124
>AF227923-1|AAF36721.1| 351|Tribolium castaneum abdominal-B
protein.
Length = 351
Score = 25.0 bits (52), Expect = 0.63
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 241 STPPRRTTSSGAPAASRTSVS 179
+ PP TTSSG+PA+ ++ S
Sbjct: 32 AAPPPATTSSGSPASVASNAS 52
>AY362544-1|AAQ63456.1| 268|Tribolium castaneum chitin synthase
protein.
Length = 268
Score = 23.8 bits (49), Expect = 1.5
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = -3
Query: 538 RSIFRIEC--CINGVVEEHRVLRHD 470
+S+FR++ C + +V EH L+HD
Sbjct: 7 KSVFRLDQDQCSHRIVREHLGLKHD 31
>AY362543-1|AAQ63455.1| 677|Tribolium castaneum chitin synthase
protein.
Length = 677
Score = 23.8 bits (49), Expect = 1.5
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = -3
Query: 538 RSIFRIEC--CINGVVEEHRVLRHD 470
+S+FR++ C + +V EH L+HD
Sbjct: 321 KSVFRLDQDQCSHRIVREHLGLKHD 345
>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
protein.
Length = 1464
Score = 23.8 bits (49), Expect = 1.5
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = -3
Query: 538 RSIFRIEC--CINGVVEEHRVLRHD 470
+S+FR++ C + +V EH L+HD
Sbjct: 554 KSVFRLDQDQCSHRIVREHLGLKHD 578
>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
CHS2 protein.
Length = 1464
Score = 23.8 bits (49), Expect = 1.5
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = -3
Query: 538 RSIFRIEC--CINGVVEEHRVLRHD 470
+S+FR++ C + +V EH L+HD
Sbjct: 554 KSVFRLDQDQCSHRIVREHLGLKHD 578
>U77974-1|AAB36556.1| 276|Tribolium castaneum transcription factor
homolog protein.
Length = 276
Score = 23.4 bits (48), Expect = 1.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 252 VPSDTAPRGSSLTTSVLKSPPEAPL 326
VP+ ++PR S + + V SP PL
Sbjct: 223 VPTKSSPRSSPVQSDVSLSPVHEPL 247
>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
protein protein.
Length = 1156
Score = 22.6 bits (46), Expect = 3.4
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 228 RGGVEFKHVPSDTAPRGSSLTTSVLKSPPEAPLHWSGPSARENRR 362
R G E + + R SLT PP PL+ S P + ++R
Sbjct: 805 RSGSESSSISERCSSRVESLTPERKMEPPGVPLN-STPRSTPDKR 848
Score = 21.8 bits (44), Expect = 5.9
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1
Query: 336 PTNATVLPGAIL 301
PTNA PGAIL
Sbjct: 1026 PTNAGTTPGAIL 1037
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,287
Number of Sequences: 336
Number of extensions: 3226
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19571740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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