Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0177.Seq
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    67   3e-12
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces...    36   0.006
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    25   0.20 
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    27   2.0  
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    27   2.6  
SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          27   3.5  
SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|...    26   6.1  
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    26   6.1  
SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase Alg11|Schiz...    26   6.1  

>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 33/76 (43%), Positives = 48/76 (63%)
 Frame = +2

Query: 2   SSFPDVVAGAARAAHIHYVANNQLLNHGDLLLVDSGCQRWLYNSDISRTWPVSGLFTRHQ 181
           S++  VVAG      IHY  NN +    +++LVD+G +   Y +DISRTWP++G F+  Q
Sbjct: 284 SAYVPVVAGGKNGLTIHYTINNDIFRPDEMVLVDAGGEFGGYVTDISRTWPINGKFSTVQ 343

Query: 182 RIL*ELVLAVQKRLIE 229
           R L + VL VQK+ I+
Sbjct: 344 RDLYQAVLNVQKKCIK 359



 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 26/81 (32%), Positives = 45/81 (55%)
 Frame = +1

Query: 253 ADQLFDSMCRLLGTQLQQEGILPKNIDGHELISMAYSLCPHHVSHHLGLDVHDAPLVRRA 432
           AD  F+S+ +L+  +L+Q GI        E+  + Y   PH + H +GL++HD       
Sbjct: 370 ADIHFESV-KLMHEELKQVGIHGTK---REITDILY---PHSIGHEIGLEIHDCSTNNGY 422

Query: 433 TPVLTNMIVTVEPGIYIRTDD 495
            P+  N ++T+EPG+Y+  +D
Sbjct: 423 QPLRKNQVITIEPGLYVPEED 443



 Score = 42.7 bits (96), Expect = 5e-05
 Identities = 17/35 (48%), Positives = 26/35 (74%)
 Frame = +3

Query: 516 RGLGIRIEDDVLITDGDPLVLTDSCAKEVQDIEAI 620
           +G+ IRIED V++ D  P VLT +  KE+++IEA+
Sbjct: 450 QGIAIRIEDSVIVGDDKPFVLTSAAPKEIEEIEAL 484


>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 451

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +1

Query: 373 HHVSHHLGLDVHDAPLVRRA---TPVLTNMIVTVEPGIYI 483
           H + H LGL+ H+   +  A   TPV    + TVEPGIYI
Sbjct: 380 HRLGHGLGLEEHEQTYLNPANKGTPVQKGNVFTVEPGIYI 419



 Score = 31.1 bits (67), Expect = 0.16
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = +2

Query: 17  VVAGAARAAHIHYVANNQLLNHGDLLLVDSGCQRWLYNSDISRT-WPVSGLFTRHQRIL* 193
           +V    RAA  H   +N+ L   + +L+D G   + Y+SD +RT  P     T     L 
Sbjct: 277 IVLFGERAAMPHGGPSNRRLKKSEFVLMDVGTTLFGYHSDCTRTVLPHGQKMTERMEKLW 336

Query: 194 ELVLAVQKRLIEILGEHRPARTSCS 268
            LV   Q   I++L     + TSC+
Sbjct: 337 NLVYDAQTAGIQMLS--HLSNTSCA 359



 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = +3

Query: 522 LGIRIEDDVLITDGDPLVLTDSCAK 596
           +GIRIED VL +D  P++LT+  AK
Sbjct: 423 IGIRIEDAVLASD-VPILLTNFRAK 446


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 25.0 bits (52), Expect(2) = 0.20
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 434 VARRTSGASCTSSPRWWDTWCG 369
           V+ R S  S  + P WWD+ CG
Sbjct: 105 VSERNSMCSTVNYPTWWDS-CG 125



 Score = 24.2 bits (50), Expect(2) = 0.20
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 260 WSARGGAPPGFLLSVSARRAPALTGSS 180
           W + GG P GFLLS++    P  TG +
Sbjct: 121 WDSCGGFP-GFLLSLNDISEPGETGEA 146


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 495 HPGAGEFRGLGIRIEDDVLITDGDPLVLTDSCAKEVQDIEAIVGK 629
           HP   + +   + + D + IT  DP+V TDS  K   DI    G+
Sbjct: 398 HPKNSQSKEYALLLIDTIQITRSDPIVFTDS-PKAQGDISYFFGE 441


>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +2

Query: 5   SFPDVVAGAARAAHIHY---VANNQLLNHGDLLLVDSGCQRWLYNSDISRTW 151
           SF  + +     A IHY      + +++   + L DSG Q     +D++RTW
Sbjct: 362 SFETISSTGPNGAVIHYSPPATGSAIIDPTKIYLCDSGAQYKDGTTDVTRTW 413


>SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +2

Query: 134 DISRTWPVSGLFTRHQRIL*ELVLAVQKRLIEILG--EHRPARTSCSTAC-AGCWARSCS 304
           D+S T+P    F  +  IL +    V+++L+   G  EH+  +      C +G ++ +CS
Sbjct: 335 DLSFTFPAGAFFQNNNSILEKFTSYVREQLLNPFGRKEHQRPKYFVDAYCGSGLFSVACS 394

Query: 305 R 307
           +
Sbjct: 395 K 395


>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 38  AAHIHYVANNQLLNHGDLLLVDSGCQRWL 124
           A+H H +A     NH   L++  GC +W+
Sbjct: 185 ASHEHLIAQK---NHSQYLVLKKGCFKWI 210


>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +1

Query: 415 PLVRRATPVLTNMIVTVEPGIYIR 486
           PLV +A PVL NM+  V+P I+++
Sbjct: 404 PLVNQALPVLINMM--VDPVIFVK 425


>SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase
           Alg11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 471

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 216 FCTASTSSYRILWWRVKSPETGHVREMSELY 124
           +C A     R+LW  VKS +T     +S +Y
Sbjct: 63  YCNAGGGGERVLWTAVKSVQTEFPNVISVVY 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,458,017
Number of Sequences: 5004
Number of extensions: 42874
Number of successful extensions: 113
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)