Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0177.Seq
(709 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0786 + 23139854-23139901,23140054-23140122,23140531-231405... 55 6e-08
02_02_0120 + 6984482-6984643,6984748-6984797,6984936-6984996,698... 45 7e-05
05_03_0619 + 16274255-16274396,16274775-16274848,16275111-162761... 31 1.2
04_04_0706 + 27419215-27419371,27419521-27419734,27419818-274199... 29 2.7
08_02_1554 + 27841801-27842007,27842282-27842455,27842554-278426... 29 3.6
03_02_0877 - 12072996-12073285,12074312-12074615,12074699-120748... 29 4.8
10_07_0160 - 13656172-13656476,13656799-13657528 28 6.3
11_07_0003 - 27182551-27183054 28 8.4
09_02_0278 + 6691685-6692188 28 8.4
07_03_0151 - 14465479-14465675,14466280-14466401,14466934-144670... 28 8.4
02_04_0211 + 20957553-20957828,20957944-20958258,20962094-209628... 28 8.4
02_01_0714 + 5339408-5340020,5340117-5340319,5340408-5340605,534... 28 8.4
>12_02_0786 +
23139854-23139901,23140054-23140122,23140531-23140544,
23140603-23140675,23140875-23140979,23141817-23142080,
23142159-23142251,23142381-23142587,23143155-23143258,
23143436-23143502,23143576-23143683,23143943-23144033,
23144123-23144193,23144421-23144549,23144659-23144766
Length = 516
Score = 54.8 bits (126), Expect = 6e-08
Identities = 26/59 (44%), Positives = 36/59 (61%)
Frame = +2
Query: 5 SFPDVVAGAARAAHIHYVANNQLLNHGDLLLVDSGCQRWLYNSDISRTWPVSGLFTRHQ 181
+F VV G A + IHY N+ + G+LLL+D GC+ Y SD++RTWP G F+ Q
Sbjct: 326 AFHPVVGGGANGSVIHYSRNDGRVKAGELLLMDVGCEYHGYLSDLTRTWPPCGRFSPAQ 384
Score = 44.8 bits (101), Expect = 7e-05
Identities = 25/79 (31%), Positives = 42/79 (53%)
Frame = +1
Query: 247 PRADQLFDSMCRLLGTQLQQEGILPKNIDGHELISMAYSLCPHHVSHHLGLDVHDAPLVR 426
P + + ++L Q+ GIL K + I Y L P + H LG+D+HD+ +
Sbjct: 375 PPCGRFSPAQVKMLIKGFQELGILEKG----KSIQYNY-LNPTAIGHSLGMDIHDSVKLS 429
Query: 427 RATPVLTNMIVTVEPGIYI 483
+ P+ +I+T+EPG+YI
Sbjct: 430 KDKPLEPGVIITIEPGVYI 448
Score = 41.1 bits (92), Expect = 8e-04
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = +3
Query: 513 FRGLGIRIEDDVLITDGDPLVLTDSCAKEVQDIEAIV 623
+RG+GIRIED+VLIT+ VLT S KE+ I ++
Sbjct: 462 YRGIGIRIEDEVLITESGHEVLTASVPKEISHITTLM 498
>02_02_0120 +
6984482-6984643,6984748-6984797,6984936-6984996,
6985574-6985669,6985754-6985903,6986208-6986339,
6986641-6986768,6987285-6987327,6987935-6988018,
6989049-6989090,6989264-6989334,6989621-6989674,
6989789-6989894,6990038-6990106,6990824-6990967,
6992038-6992113,6992295-6992353
Length = 508
Score = 44.8 bits (101), Expect = 7e-05
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Frame = +2
Query: 5 SFPDVVAGAARAAHIHY----VANNQLLNHGDLLLVDSGCQRWLYNSDISRTWPVSGLFT 172
S+ + A ++ +HY N++ LN GD+ L+D G + Y SDI+ ++P++G F
Sbjct: 249 SYTCICATGENSSVLHYGHAAAPNDRTLNDGDMALMDMGGEYHCYGSDITCSYPINGKFN 308
Query: 173 RHQRIL*ELVLAVQKRLI 226
+Q I+ VL +I
Sbjct: 309 SNQTIVYNAVLKAHNAVI 326
>05_03_0619 +
16274255-16274396,16274775-16274848,16275111-16276139,
16276484-16276702,16277228-16277250,16277482-16277606,
16279480-16279670,16280202-16280360,16281359-16281598
Length = 733
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 492 RHPGAGEFRGLGIRIEDDVLITDGDPLVLTDSCAKEVQDIEAIVG 626
+HP G G+ ++D ++I DG +L D EVQD ++G
Sbjct: 169 KHPNGNIIEGFGV-VQDVLVINDGKEAIL-DFHVFEVQDFNVLIG 211
>04_04_0706 + 27419215-27419371,27419521-27419734,27419818-27419913,
27420006-27420123,27420211-27420384,27420633-27420803,
27420932-27420987,27421125-27421214,27421296-27421444,
27421640-27421722,27421830-27421958,27422063-27422137,
27422248-27422416,27422965-27423104,27423191-27423298,
27423603-27423783,27424445-27424542,27424639-27424728,
27424881-27425034,27425376-27425431,27425483-27425533,
27425651-27425732,27425821-27425995,27426748-27426823,
27426951-27427121,27427198-27427269,27427350-27427454,
27427948-27428037,27428703-27428908,27428989-27429190,
27429294-27429473,27429858-27429925,27430005-27430341,
27430428-27430637,27430765-27431448,27431537-27431940,
27432495-27432542,27432777-27433023,27433381-27433602,
27433796-27434026
Length = 2122
Score = 29.5 bits (63), Expect = 2.7
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 5/112 (4%)
Frame = +1
Query: 148 VAGLRTL--HAPPEDPVRAGARRAETLNRNPGGAPPRADQLFD--SMCRLLGTQ-LQQEG 312
++ L TL P ++P T + N G A + ++ S+ +LG++ L Q
Sbjct: 1581 ISSLETLAKEYPSDNPAYRKCLAKITNHINSGDAVTSSRSIYTVGSLINVLGSKALPQLP 1640
Query: 313 ILPKNIDGHELISMAYSLCPHHVSHHLGLDVHDAPLVRRATPVLTNMIVTVE 468
++ KN+ +S S CP H DA L +A P+L +++ TVE
Sbjct: 1641 LIMKNM---LQVSHQVSFCPSGKYAHSSTKT-DAKLSNQAIPILLSVLTTVE 1688
>08_02_1554 +
27841801-27842007,27842282-27842455,27842554-27842653,
27843273-27843725,27843936-27844469,27844500-27844580,
27844690-27844781,27844890-27844963,27845071-27845293,
27845429-27845522,27845607-27845761,27845899-27846129,
27846803-27847003,27847257-27847382,27847497-27847558,
27847775-27847892,27848040-27848324,27848475-27848513
Length = 1082
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Frame = +1
Query: 178 PEDPVRAGARRAETLNRNPGGAPPRADQLFDSMCRLLGTQLQQEGI--LPKNIDGHELIS 351
P+ RA + + + +P R Q + + G L +E + + I + +S
Sbjct: 232 PDTAARASISNLQLVTVSSKSSPKRLAQKGKEVTQKKGILLPKERVREVVVYILFSDSVS 291
Query: 352 MAYSLCPHHVSHHLGLDVHDAPLVRRATPVLTN--MIVTVEP 471
+ + PH + H++ D+H V+ + + N I+T+ P
Sbjct: 292 KGHVMLPHSIRHYISADIHSWVYVKTFSANVKNDQPILTISP 333
>03_02_0877 -
12072996-12073285,12074312-12074615,12074699-12074871,
12075299-12075434,12076327-12076788,12076882-12077189,
12077724-12078105
Length = 684
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 453 DRHCRTRYLHPDGRHPGAGEFRGLGI 530
D C R+ HP G+ G+G RG+G+
Sbjct: 598 DLGCLYRHRHPRGKDRGSGRRRGIGL 623
>10_07_0160 - 13656172-13656476,13656799-13657528
Length = 344
Score = 28.3 bits (60), Expect = 6.3
Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 3/115 (2%)
Frame = +1
Query: 166 LHAPPEDPVRAGARRAETLNRNPGGAPPRADQLFDSMCRLLGTQLQQEGILPKNIDGHEL 345
LHA DP+ AGA NR P D F S+ L + P +I +
Sbjct: 23 LHASSVDPLSAGATTVRYWNRKIPNNAPHPD-FFLSLLSPLPASVSSSLSSPLSI-SPSI 80
Query: 346 ISMAYSLCPHHV---SHHLGLDVHDAPLVRRATPVLTNMIVTVEPGIYIRTDDTR 501
A LCP+ S + + T + +T++PGI+ R + +
Sbjct: 81 CRSARLLCPNSTYFQSLSSTVFIDGCTFSYSCTFTYEHTNITIKPGIFFREQELK 135
>11_07_0003 - 27182551-27183054
Length = 167
Score = 27.9 bits (59), Expect = 8.4
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = -3
Query: 269 SNSWSARGGAP---PGFLLSVSARRAPALTGSSGGA*RVRRPAT 147
S+S S+ GG+ P S S+ R PA TGS GG VR PAT
Sbjct: 47 SSSGSSSGGSSTRSPVGSASPSSGRNPATTGSPGG---VRSPAT 87
>09_02_0278 + 6691685-6692188
Length = 167
Score = 27.9 bits (59), Expect = 8.4
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = -3
Query: 269 SNSWSARGGAP---PGFLLSVSARRAPALTGSSGGA*RVRRPAT 147
S+S S+ GG+ P S S+ R PA TGS GG VR PAT
Sbjct: 47 SSSGSSSGGSSTRSPVGSASPSSGRNPATTGSPGG---VRSPAT 87
>07_03_0151 -
14465479-14465675,14466280-14466401,14466934-14467081,
14467146-14467167,14467299-14467393,14467395-14467438,
14467750-14467841,14467911-14467982,14468188-14468229,
14468333-14468494,14468631-14468683,14468808-14468925,
14468974-14469150,14469573-14469639,14470195-14470273,
14473805-14473862,14474257-14474346,14474429-14474540,
14474649-14474912,14475361-14475463,14476200-14476278,
14476748-14476852
Length = 766
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +2
Query: 8 FPDVVAGAARAAHIHYVANNQLLNHGDLLLVDSGCQRWLYNSDISRTW 151
FP V + H + ++++L +GD++ +D Y+ D SRT+
Sbjct: 466 FPKSVCTSVNECICHGIPDSRVLQNGDIINIDVTVYLNGYHGDTSRTY 513
>02_04_0211 +
20957553-20957828,20957944-20958258,20962094-20962801,
20963362-20963609,20963758-20964101,20964200-20964236,
20964270-20964575,20965281-20965347,20965498-20965626
Length = 809
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = -3
Query: 446 VSTGVARRTSGASCTSSPRWWDTWCGHRLYAIEISSCPSMFL 321
++TG+ S +SP WW+ G R A + P F+
Sbjct: 172 MATGLGTNPYTGSIDASPEWWEAMEGMRKCARSFRNAPLRFI 213
>02_01_0714 +
5339408-5340020,5340117-5340319,5340408-5340605,
5340703-5340774,5341197-5341292,5341828-5341907,
5341993-5342068,5342152-5342362,5342562-5342755,
5342834-5342939,5343037-5343126,5343470-5344206
Length = 891
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = -3
Query: 593 GAGVGEHERVPVRDEDVVFYTDTQAAELPGTRVSSVRM*IPGSTVT 456
G H V +D DTQ A L GT V +PG+ +T
Sbjct: 729 GTDTAIHATFRVHPQDSAGQLDTQGATLKGTSVQIEPFDLPGTVIT 774
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,934,500
Number of Sequences: 37544
Number of extensions: 384405
Number of successful extensions: 1368
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1367
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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