Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0177.Seq
         (709 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18816| Best HMM Match : No HMM Matches (HMM E-Value=.)              87   2e-17
SB_19952| Best HMM Match : Peptidase_M24 (HMM E-Value=4e-05)           37   0.018
SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_10665| Best HMM Match : PT (HMM E-Value=6.2)                        29   4.9  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_29574| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_18816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 41/76 (53%), Positives = 54/76 (71%)
 Frame = +2

Query: 5   SFPDVVAGAARAAHIHYVANNQLLNHGDLLLVDSGCQRWLYNSDISRTWPVSGLFTRHQR 184
           ++P VVAG A A  +HY+ N Q+L  GDL+L+DSGC+   Y SDI+RTWPV+G FT  QR
Sbjct: 316 AYPPVVAGGALANTLHYINNTQVLRDGDLVLMDSGCEYHGYASDITRTWPVNGTFTGPQR 375

Query: 185 IL*ELVLAVQKRLIEI 232
            L ++VL VQK  I +
Sbjct: 376 ELYDIVLEVQKTCISL 391



 Score = 64.9 bits (151), Expect = 6e-11
 Identities = 25/48 (52%), Positives = 36/48 (75%)
 Frame = +1

Query: 352 MAYSLCPHHVSHHLGLDVHDAPLVRRATPVLTNMIVTVEPGIYIRTDD 495
           +A  LCPHHV H+LG+DVHD  LV R+  +   M+VT+EPG+YI +++
Sbjct: 414 VAVELCPHHVGHYLGMDVHDTHLVSRSLSMQPGMVVTIEPGLYINSNN 461



 Score = 41.1 bits (92), Expect = 9e-04
 Identities = 17/37 (45%), Positives = 27/37 (72%)
 Frame = +3

Query: 513 FRGLGIRIEDDVLITDGDPLVLTDSCAKEVQDIEAIV 623
           + G+GIRIEDD+LIT+    VL+  C K+ ++IE ++
Sbjct: 468 YHGIGIRIEDDILITEEGQEVLSAECPKDPKEIEKLM 504


>SB_19952| Best HMM Match : Peptidase_M24 (HMM E-Value=4e-05)
          Length = 173

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 15/82 (18%)
 Frame = +1

Query: 280 RLLGTQLQQEGILPKNIDGHELISMAYSLCPHHVSHHLGLDVHDA-----PLVRRATPVL 444
           R++  +L   G L   +D      + Y   PH + H +G+DVHD       + R + P L
Sbjct: 7   RVILEELTAAGFLRGEVDEMVKHHIGYLFMPHGLGHFMGIDVHDVGGYPEGVERSSLPGL 66

Query: 445 ----------TNMIVTVEPGIY 480
                      NM++T+EPGIY
Sbjct: 67  RSLRCGRVLEQNMVLTIEPGIY 88



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/35 (37%), Positives = 24/35 (68%)
 Frame = +3

Query: 525 GIRIEDDVLITDGDPLVLTDSCAKEVQDIEAIVGK 629
           G+RIEDD+++T  D + L     + V++IEA++ +
Sbjct: 120 GVRIEDDIVVT-SDGMELMTCVPRTVEEIEALMAQ 153


>SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 220

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +2

Query: 8   FPDVVAGAARAAHIHYVANNQLLNHGDLLLVDSGCQRWLYNSDISRTWPVSGLFTRHQRI 187
           FP  V  +     +H + N++ L +GDLL VD        + D+  T+ V  +    +R+
Sbjct: 105 FPKSVCTSVNEVAVHGIPNSRCLQNGDLLSVDISLFYGGVHGDLCETFLVGNVDESGRRL 164

Query: 188 L 190
           +
Sbjct: 165 V 165


>SB_10665| Best HMM Match : PT (HMM E-Value=6.2)
          Length = 215

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = +1

Query: 136 HLPHVAGLRTLHAPPEDPVRAGARRAETLNRNPGG 240
           H PH+   RT H P  DP R          RNP G
Sbjct: 162 HRPHMDPTRTPHRPHMDPTRTSHGPHTDPTRNPHG 196


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 135  TSPARGRSPDSSRATRGSCKSWCSPCRNA**KSWGSTAPRGPA 263
            TSP+  R+P+  R +RGS +S   P R    +S  ++ PR  A
Sbjct: 1071 TSPSPRRTPEDRRRSRGSRRSPSPPKREPRRRSPSASPPRREA 1113


>SB_29574| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 443

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
 Frame = +2

Query: 215 KRLIEILGEHR--PARTSCSTA---CAGCWARSCSRRGYCPRTST 334
           K +I   G+ R    R SC  A   C G W R   + GYC +  T
Sbjct: 20  KEIISFKGKTRFTTLRGSCKKANLYCTGAWGRCFIKTGYCRKDIT 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,570,540
Number of Sequences: 59808
Number of extensions: 397572
Number of successful extensions: 1513
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1509
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)