Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0177.Seq
         (709 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    28   0.33 
AF080565-1|AAC31945.1|  324|Anopheles gambiae Antennapedia homeo...    24   4.1  
DQ383819-1|ABD38144.1|  377|Anopheles gambiae abdominal-B protein.     23   9.4  

>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
           transcription factor FRU-MA protein.
          Length = 960

 Score = 27.9 bits (59), Expect = 0.33
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 319 PKNIDGHELISMAYSLCPHHVSHHLGLDVHD 411
           P NIDG  ++ +A +   HH  H  GL  HD
Sbjct: 475 PDNIDGDRMLRLAMASRHHH--HRAGLHHHD 503


>AF080565-1|AAC31945.1|  324|Anopheles gambiae Antennapedia homeotic
           protein protein.
          Length = 324

 Score = 24.2 bits (50), Expect = 4.1
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +1

Query: 286 LGTQLQQEGILPKNIDGHELISMAYSLCPHHVSHHLGLDVH 408
           LGT   + G  P +  GH + +   ++  HH+ H  G + +
Sbjct: 134 LGTYGTENGSPPLDQMGHHMGTAQMTIPQHHMGHSQGQECY 174


>DQ383819-1|ABD38144.1|  377|Anopheles gambiae abdominal-B protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 9.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 370 PHHVSHHLGL 399
           PHH  HH+GL
Sbjct: 354 PHHNPHHIGL 363


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 663,798
Number of Sequences: 2352
Number of extensions: 12793
Number of successful extensions: 45
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 72340815
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)