Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0177.Seq
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF063007-3|AAC16431.2|  362|Caenorhabditis elegans Hypothetical ...    75   5e-14
AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical ...    41   0.001
AC006637-1|AAK85476.2|  342|Caenorhabditis elegans Hypothetical ...    29   3.3  
U61947-1|AAB03136.3|  667|Caenorhabditis elegans Thioredoxin red...    29   4.3  
AF162693-1|AAD46625.1|  525|Caenorhabditis elegans thioredoxin r...    29   4.3  
AF148217-1|AAD41826.1|  667|Caenorhabditis elegans thioredoxin r...    29   4.3  
U88314-6|AAF99886.1|  240|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>AF063007-3|AAC16431.2|  362|Caenorhabditis elegans Hypothetical
           protein R119.2 protein.
          Length = 362

 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 35/81 (43%), Positives = 48/81 (59%)
 Frame = +1

Query: 250 RADQLFDSMCRLLGTQLQQEGILPKNIDGHELISMAYSLCPHHVSHHLGLDVHDAPLVRR 429
           R   LF  M  LL     + G++ ++ D  E+I  A  LCPHHVSH+LG+DVHD P V R
Sbjct: 236 RLSALFRRMNELLAASFTELGLI-RSTDHKEMIHQAEKLCPHHVSHYLGMDVHDCPTVSR 294

Query: 430 ATPVLTNMIVTVEPGIYIRTD 492
              +  N+  T+EPG+Y+  D
Sbjct: 295 DIDLPPNVPFTIEPGVYVPMD 315



 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 30/74 (40%), Positives = 46/74 (62%)
 Frame = +2

Query: 5   SFPDVVAGAARAAHIHYVANNQLLNHGDLLLVDSGCQRWLYNSDISRTWPVSGLFTRHQR 184
           ++P V+AG  RA  IHY+  N  LN  + +LVD+GC    Y SD++R +P+SG ++  Q 
Sbjct: 153 AYPPVIAGGVRANTIHYLDANNDLNPRECVLVDAGCDLNGYVSDVTRCFPISGFWSDAQL 212

Query: 185 IL*ELVLAVQKRLI 226
            L E +L V + L+
Sbjct: 213 SLYEALLYVHEELL 226



 Score = 32.3 bits (70), Expect = 0.35
 Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = +3

Query: 510 EFRGLGIRIEDDVLITD-GDPLVLTDSCAKEVQDIEAIVG 626
           EFRG+G RIEDDV  ++ G   +LT +  ++  +I+ ++G
Sbjct: 320 EFRGIGYRIEDDVATSEAGGIELLTAAVPRDPIEIQRLMG 359


>AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical
           protein K12C11.1 protein.
          Length = 498

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
 Frame = +2

Query: 17  VVAGAARAAHIHY----VANNQLLNHGDLLLVDSGCQRWLYNSDISRTWPVSGLFTRHQR 184
           + A     + +HY      N++ +  GD+ L D G +   Y SDI+ ++P +G FT  Q+
Sbjct: 241 IAATGCNGSVLHYGHANAPNDKFIKDGDMCLFDMGPEYNCYASDITTSFPSNGKFTEKQK 300

Query: 185 IL*ELVLAVQKRLIE 229
           I+   VLA    +++
Sbjct: 301 IVYNAVLAANLAVLK 315



 Score = 31.1 bits (67), Expect = 0.81
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 16/77 (20%)
 Frame = +1

Query: 298 LQQEGILPKNIDGHELISMAYSLCPHHVSHHLGLDVHD-APLVRRATP------------ 438
           L+Q G++  +ID      +     PH + H +GLDVHD    +  ATP            
Sbjct: 338 LKQAGLIVGDIDKAVEARVGAVFMPHGLGHLIGLDVHDCGGYMGDATPRSTLPGLKSLRT 397

Query: 439 ---VLTNMIVTVEPGIY 480
              ++  M +T+EPG Y
Sbjct: 398 TRTLMERMAITIEPGCY 414


>AC006637-1|AAK85476.2|  342|Caenorhabditis elegans Hypothetical
           protein F41B4.1 protein.
          Length = 342

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 12/67 (17%)
 Frame = +1

Query: 175 PPEDPVRAGARRAETLNRNPGGAPPRADQLFDSMCRLLGTQLQ------QEGILPK---- 324
           PP  P +  + + E + R+    P    + + SM +LLG+Q +      ++GI P+    
Sbjct: 58  PPPPPRKTPSHKYEEMRRSLSRGPSSTLERYSSMDKLLGSQNREKNVEIEQGINPRDLPV 117

Query: 325 --NIDGH 339
             NIDGH
Sbjct: 118 CPNIDGH 124


>U61947-1|AAB03136.3|  667|Caenorhabditis elegans Thioredoxin
           reductase protein 1 protein.
          Length = 667

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -2

Query: 192 YRILWWRVKSPETGHVREMSELYN 121
           YR+ W + K+ ETG ++E+SE YN
Sbjct: 430 YRVFWPK-KNEETGEMQEVSEEYN 452


>AF162693-1|AAD46625.1|  525|Caenorhabditis elegans thioredoxin
           reductase homolog protein.
          Length = 525

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -2

Query: 192 YRILWWRVKSPETGHVREMSELYN 121
           YR+ W + K+ ETG ++E+SE YN
Sbjct: 288 YRVFWPK-KNEETGEMQEVSEEYN 310


>AF148217-1|AAD41826.1|  667|Caenorhabditis elegans thioredoxin
           reductase protein.
          Length = 667

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -2

Query: 192 YRILWWRVKSPETGHVREMSELYN 121
           YR+ W + K+ ETG ++E+SE YN
Sbjct: 430 YRVFWPK-KNEETGEMQEVSEEYN 452


>U88314-6|AAF99886.1|  240|Caenorhabditis elegans Hypothetical
           protein C46H11.7 protein.
          Length = 240

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 155 PATCGRCQSCTTNADS 108
           P TCGRC S TT++ S
Sbjct: 123 PRTCGRCNSTTTSSTS 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,519,664
Number of Sequences: 27780
Number of extensions: 278059
Number of successful extensions: 864
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)