Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0177.Seq
         (709 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g09300.1 68414.m01041 metallopeptidase M24 family protein sim...    67   1e-11
At4g29490.1 68417.m04208 Xaa-Pro dipeptidase, putative / prolida...    42   3e-04
At4g29500.1 68417.m04209 prolidase-related contains similarity t...    33   0.14 
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf...    27   9.2  
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf...    27   9.2  
At5g23680.1 68418.m02776 sterile alpha motif (SAM) domain-contai...    27   9.2  
At1g09050.1 68414.m01009 expressed protein                             27   9.2  
At1g09040.1 68414.m01008 expressed protein                             27   9.2  

>At1g09300.1 68414.m01041 metallopeptidase M24 family protein
           similar to SP|P15034 Xaa-Pro aminopeptidase (EC
           3.4.11.9) (X-Pro aminopeptidase) (Aminopeptidase P II)
           (Aminoacylproline aminopeptidase) {Escherichia coli};
           contains Pfam profiles PF00557: metallopeptidase family
           M24, PF05195: Aminopeptidase P, N-terminal domain
          Length = 493

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 32/75 (42%), Positives = 46/75 (61%)
 Frame = +2

Query: 5   SFPDVVAGAARAAHIHYVANNQLLNHGDLLLVDSGCQRWLYNSDISRTWPVSGLFTRHQR 184
           +F  VV G + A+ IHY  N+Q +  GDL+L+D GC+   Y SD++RTWP  G F+  Q 
Sbjct: 264 AFNPVVGGGSNASVIHYSRNDQRIKDGDLVLMDMGCELHGYVSDLTRTWPPCGKFSSVQE 323

Query: 185 IL*ELVLAVQKRLIE 229
            L +L+L   K  I+
Sbjct: 324 ELYDLILQTNKECIK 338



 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 17/42 (40%), Positives = 27/42 (64%)
 Frame = +1

Query: 358 YSLCPHHVSHHLGLDVHDAPLVRRATPVLTNMIVTVEPGIYI 483
           + L P  + H+LG+DVHD+  V    P+    ++T+EPG+YI
Sbjct: 374 HQLNPTSIGHYLGMDVHDSSAVGYDRPLQPGFVITIEPGVYI 415



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 21/42 (50%), Positives = 29/42 (69%)
 Frame = +3

Query: 513 FRGLGIRIEDDVLITDGDPLVLTDSCAKEVQDIEAIVGKQAY 638
           F+G+GIRIEDDVLIT+    VLT S  KE++ IE ++    +
Sbjct: 425 FQGIGIRIEDDVLITETGYEVLTGSMPKEIKHIETLLNNHCH 466


>At4g29490.1 68417.m04208 Xaa-Pro dipeptidase, putative / prolidase,
           putative / imidodipeptidase, putative similar to
           SP|P12955 Xaa-Pro dipeptidase (EC 3.4.13.9) (X-Pro
           dipeptidase) (Proline dipeptidase) (Prolidase)
           (Imidodipeptidase) {Homo sapiens}; contains Pfam
           profiles PF00557: metallopeptidase family M24, PF05195:
           Aminopeptidase P, N-terminal domain
          Length = 333

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
 Frame = +2

Query: 5   SFPDVVAGAARAAHIHY----VANNQLLNHGDLLLVDSGCQRWLYNSDISRTWPVSGLFT 172
           S+  + A    +A +HY      N++    GDL L+D G +   Y SDI+ ++PV+G FT
Sbjct: 238 SYTCICATGDNSAVLHYGHAAAPNDRTFEDGDLALLDMGAEYHFYGSDITCSFPVNGKFT 297

Query: 173 RHQRIL 190
             Q ++
Sbjct: 298 SDQSLI 303


>At4g29500.1 68417.m04209 prolidase-related contains similarity to
           prolidase GI:3114966 from [Suberites domuncula]
          Length = 169

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 15/82 (18%)
 Frame = +1

Query: 280 RLLGTQLQQEGILPKNIDGHELISMAYSLCPHHVSHHLGLDVHDA--------------- 414
           +++   L++  IL  ++D   +  +     PH + H +G+D HD                
Sbjct: 16  KIILESLKKGSILTGDVDDMMVQRLGAVFMPHGLGHFMGIDTHDTGGYPKGVERPKKPGL 75

Query: 415 PLVRRATPVLTNMIVTVEPGIY 480
             +R A  +L  M++TVEPG Y
Sbjct: 76  KSLRTARDLLEGMVITVEPGCY 97


>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 698

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -1

Query: 211 HGEHQLLQDPLVAREE 164
           HGE +LL DP+VA EE
Sbjct: 165 HGEPKLLPDPMVAEEE 180


>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 694

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -1

Query: 211 HGEHQLLQDPLVAREE 164
           HGE +LL DP+VA EE
Sbjct: 165 HGEPKLLPDPMVAEEE 180


>At5g23680.1 68418.m02776 sterile alpha motif (SAM)
           domain-containing protein contains Pfam profile PF00536:
           SAM domain (Sterile alpha motif)
          Length = 295

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 248 GGAPPGFLLSVSARRAPALTGSSGGA*RVRRPA 150
           G  PP  + S+ A    A  G S G+ R+RRP+
Sbjct: 15  GFIPPAIINSIEAPETSAAAGVSVGSKRLRRPS 47


>At1g09050.1 68414.m01009 expressed protein
          Length = 916

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/61 (31%), Positives = 25/61 (40%)
 Frame = -3

Query: 551 EDVVFYTDTQAAELPGTRVSSVRM*IPGSTVTIMLVSTGVARRTSGASCTSSPRWWDTWC 372
           ED+   T T     P   VSS    +PG      L S G+  + +G S  S  R  D + 
Sbjct: 281 EDLTVPTSTPMKTKPWFTVSSKSSLVPGEGDYNSLTSAGIINQLTGCSRLSKARCNDIFW 340

Query: 371 G 369
           G
Sbjct: 341 G 341


>At1g09040.1 68414.m01008 expressed protein
          Length = 911

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/61 (31%), Positives = 25/61 (40%)
 Frame = -3

Query: 551 EDVVFYTDTQAAELPGTRVSSVRM*IPGSTVTIMLVSTGVARRTSGASCTSSPRWWDTWC 372
           ED+   T T     P   VSS    +PG      L S G+  + +G S  S  R  D + 
Sbjct: 281 EDLTVPTSTPMKTKPWFTVSSKSSLVPGEGDYNSLTSAGIINQLTGCSRLSKARCNDIFW 340

Query: 371 G 369
           G
Sbjct: 341 G 341


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,832,435
Number of Sequences: 28952
Number of extensions: 257839
Number of successful extensions: 753
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)