Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0176X.Seq
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   1.2  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    26   2.7  
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    26   3.6  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    25   6.3  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    25   6.3  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    25   8.3  

>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 21/60 (35%), Positives = 30/60 (50%)
 Frame = -2

Query: 184 LHQLRTAMHHHPPNQERAVNLSTLPVSGPGEISRVESN*AAGSTPGGALPSIPLSFSFAT 5
           L  LRT +HH P +QE +  LS+   S P   S +  + +  S+P G  PS+  S    T
Sbjct: 125 LTTLRTLLHHLP-SQEISTLLSSSLTSSPSN-SGLSLDKSLPSSPKGDSPSLSSSLPSLT 182


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = +1

Query: 157 GAWPFLIGGAICLVNSGNERDSSLLNRRRYLGVAASCRATH--*RRIKIL--LRGTGVFE 324
           G+  F +      VNSG      ++N+R+ L  ++  RAT    R I IL  L   GV +
Sbjct: 174 GSGTFAVVKLAVEVNSGKWYAIKIINKRKILLTSSEKRATEMFQREIDILKSLHHPGVVQ 233

Query: 325 PHEI 336
            HEI
Sbjct: 234 CHEI 237


>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 187 ICLVNSGNERDSSLLNRRRYLGVAASC 267
           +CL N    +D  LLNR RY+     C
Sbjct: 227 LCLWNHAYYKDYGLLNRSRYIDTWFDC 253


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 145 SVGGGAWPFLIGGAICLVNSGNERDSSLLNRRRYLGV 255
           ++  G    L  G + ++N G E D  L N  RYL V
Sbjct: 44  NIDAGTMSPLEHGEVFVLNDGGEVDLDLGNYERYLNV 80


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 159 TTTHRIKKELLICQPFRCPGLVRFPVLSQIKP 64
           T   R+ K  +     RCP ++R+P L  IKP
Sbjct: 375 TAPSRLSKGFITEGGIRCPAIIRYPPL--IKP 404


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 197 TRQIAPPIKNGHAPPPTESRKSC*SVNPSGVR 102
           T  I PP++   +  P  S  S   +NPS VR
Sbjct: 43  TTFIKPPLETASSSTPIPSSSSSGVLNPSSVR 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,049,886
Number of Sequences: 5004
Number of extensions: 39396
Number of successful extensions: 83
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)