Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0176X.Seq
         (494 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0306 + 42638683-42638990,42639074-42639314,42639935-426402...    30   0.89 
09_02_0160 - 5109290-5109626,5109918-5110026,5110295-5110691           28   4.7  
07_03_1107 - 24024387-24024497,24025799-24026410                       28   4.7  
01_06_0090 + 26358051-26359157,26359582-26359701,26359968-263600...    28   4.7  
07_01_0130 - 963856-965454                                             27   8.3  
02_04_0451 + 23021139-23021269,23021366-23021498,23021594-230217...    27   8.3  

>01_07_0306 + 42638683-42638990,42639074-42639314,42639935-42640236,
            42640431-42640607,42640853-42641617,42641697-42641791,
            42641889-42641951,42642047-42642135,42642229-42642324,
            42642457-42643104,42643596-42643628,42643838-42643912,
            42644442-42644603,42644604-42644674,42644758-42644815,
            42645196-42645394,42645487-42645552,42645699-42646183
          Length = 1310

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 494  PRLWGIIGNPIPQHEVVSAGCPGL*ARENML 402
            P LW ++  P+P+++ +  G PG   R  +L
Sbjct: 1110 PFLWNVLSAPLPKNDAIDGGLPGSADRPKLL 1140


>09_02_0160 - 5109290-5109626,5109918-5110026,5110295-5110691
          Length = 280

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +1

Query: 373 GPHARYTEGISMFSLAYRPGQPAETTSCW 459
           GPH R     S  S+A RP  P   T  W
Sbjct: 3   GPHGREKTAASPESIAQRPPSPTAVTPVW 31


>07_03_1107 - 24024387-24024497,24025799-24026410
          Length = 240

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 471 KPDSPARSSFSGLPGPIGKGEHADS 397
           K  +PA SS +  PGP G G  ADS
Sbjct: 179 KAKAPAASSTADAPGPAGDGVAADS 203


>01_06_0090 +
           26358051-26359157,26359582-26359701,26359968-26360099,
           26360194-26360375,26360488-26360602,26362001-26362135,
           26362261-26362395
          Length = 641

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 468 PDSPARSSFSGLPGPIGKGEHADSFS 391
           P++P R S SG P P G    A SF+
Sbjct: 20  PETPGRGSSSGSPAPGGSASKAVSFA 45


>07_01_0130 - 963856-965454
          Length = 532

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -2

Query: 181 HQLRTAMHHHPPNQERAVNLSTLPVSGPGEISR 83
           H +   +   PPN     NL  LP+ GP ++ +
Sbjct: 195 HIINFLLRPEPPNTLSVDNLGVLPIIGPAKVGK 227


>02_04_0451 +
           23021139-23021269,23021366-23021498,23021594-23021789,
           23023376-23023737,23024049-23024363
          Length = 378

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
 Frame = -2

Query: 184 LHQLRTAMHHHP--PNQERAVNLSTLPVSGPGEISRVESN*AAGSTPGGALPSIPLSFSF 11
           LH L T     P  P +  +   + LP   PG  S + S    G TP G +   P  F F
Sbjct: 313 LHYLSTLSPPEPLAPPRTFSSENAILPPESPGTSSLMASRGDLGDTPKGKMEDKPRGFFF 372


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,218,066
Number of Sequences: 37544
Number of extensions: 337599
Number of successful extensions: 823
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)