Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0176X.Seq
         (494 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46117| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   1e-05
SB_54484| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   9e-04
SB_21596| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   9e-04
SB_22783| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.008
SB_47613| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.018
SB_34797| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.018
SB_27909| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.018
SB_4723| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.018
SB_57065| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.018
SB_23080| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.018
SB_29700| Best HMM Match : DUF551 (HMM E-Value=8.8)                    34   0.074
SB_30350| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.23 
SB_25769| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.39 
SB_41723| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.91 
SB_30664| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_41816| Best HMM Match : Peptidase_M10 (HMM E-Value=0)               29   1.6  
SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)                 29   1.6  
SB_48355| Best HMM Match : Herpes_US9 (HMM E-Value=4.7)                29   2.1  
SB_17609| Best HMM Match : Herpes_US9 (HMM E-Value=4.7)                29   2.1  
SB_28753| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_37884| Best HMM Match : Ubie_methyltran (HMM E-Value=0.00014)       27   6.4  
SB_18807| Best HMM Match : Transketolase_N (HMM E-Value=2.9)           27   6.4  
SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_50595| Best HMM Match : Herpes_US9 (HMM E-Value=2.5)                27   8.5  

>SB_46117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 25/45 (55%), Positives = 28/45 (62%)
 Frame = +2

Query: 356 MPLDVLGRTRATLKESACSPLPIGPGNPLKLLRAGESGFQLSPIN 490
           MPLDVL RTRATL  S   P P G GN +K  RAG+   QL  +N
Sbjct: 1   MPLDVLDRTRATLTVSRVFPSPEGVGNLVKHRRAGDRSLQLLILN 45


>SB_54484| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 40.3 bits (90), Expect = 9e-04
 Identities = 23/45 (51%), Positives = 26/45 (57%)
 Frame = +2

Query: 356 MPLDVLGRTRATLKESACSPLPIGPGNPLKLLRAGESGFQLSPIN 490
           MPLDVLGRTRATL  S       G GN +K  RAG+   +L   N
Sbjct: 1   MPLDVLGRTRATLTVSTSLSFAGGVGNLVKHRRAGDRSCKLLIFN 45


>SB_21596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 40.3 bits (90), Expect = 9e-04
 Identities = 25/46 (54%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +2

Query: 356 MPLDVLGRTRATLKES-ACSPLPIGPGNPLKLLRAGESGFQLSPIN 490
           MPLDVLGRTRATL  S + S    G GN +K  RAG+   QL  +N
Sbjct: 1   MPLDVLGRTRATLTVSTSLSFARKGVGNLVKHRRAGDRSLQLLILN 46


>SB_22783| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 37.1 bits (82), Expect = 0.008
 Identities = 23/46 (50%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 356 MPLDVLGRTRA-TLKESACSPLPIGPGNPLKLLRAGESGFQLSPIN 490
           MPLDVLGRTR  T   +   P P G GN +K  RAG+   QL   N
Sbjct: 1   MPLDVLGRTRRYTDGVNESFPRPEGVGNLVKHRRAGDRSLQLLIFN 46


>SB_47613| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 35.9 bits (79), Expect = 0.018
 Identities = 23/46 (50%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +2

Query: 356 MPLDVLGRTRATLKES-ACSPLPIGPGNPLKLLRAGESGFQLSPIN 490
           MPLDVLGR R TL  S + S    G GN +K  RAG+   QL  +N
Sbjct: 1   MPLDVLGRPRVTLTVSTSLSFRRKGVGNLVKHRRAGDRSLQLLILN 46


>SB_34797| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 35.9 bits (79), Expect = 0.018
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = -3

Query: 402 DSFSVARVRPRTSKGITD 349
           D+ SVARVRPRTSKGITD
Sbjct: 34  DTVSVARVRPRTSKGITD 51


>SB_27909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 35.9 bits (79), Expect = 0.018
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = -3

Query: 402 DSFSVARVRPRTSKGITD 349
           D+ SVARVRPRTSKGITD
Sbjct: 132 DTVSVARVRPRTSKGITD 149


>SB_4723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 89

 Score = 35.9 bits (79), Expect = 0.018
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = -3

Query: 402 DSFSVARVRPRTSKGITD 349
           D+ SVARVRPRTSKGITD
Sbjct: 64  DTVSVARVRPRTSKGITD 81


>SB_57065| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 86

 Score = 35.9 bits (79), Expect = 0.018
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = -3

Query: 402 DSFSVARVRPRTSKGITD 349
           D+ SVARVRPRTSKGITD
Sbjct: 64  DTVSVARVRPRTSKGITD 81


>SB_23080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 86

 Score = 35.9 bits (79), Expect = 0.018
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = -3

Query: 402 DSFSVARVRPRTSKGITD 349
           D+ SVARVRPRTSKGITD
Sbjct: 64  DTVSVARVRPRTSKGITD 81


>SB_29700| Best HMM Match : DUF551 (HMM E-Value=8.8)
          Length = 86

 Score = 33.9 bits (74), Expect = 0.074
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = -3

Query: 402 DSFSVARVRPRTSKGITD 349
           D+ SVA VRPRTSKGITD
Sbjct: 64  DTVSVAHVRPRTSKGITD 81


>SB_30350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 18/39 (46%), Positives = 21/39 (53%)
 Frame = +2

Query: 374 GRTRATLKESACSPLPIGPGNPLKLLRAGESGFQLSPIN 490
           GRTRATL      P P G GN +K  RAG+   +L   N
Sbjct: 4   GRTRATLTGQRVFPSPEGGGNLVKHRRAGDRSCKLLIFN 42


>SB_25769| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 31.5 bits (68), Expect = 0.39
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = -3

Query: 402 DSFSVARVRPRTSKGITD 349
           D+ SVARVR +TSKGITD
Sbjct: 64  DTVSVARVRAKTSKGITD 81


>SB_41723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 38

 Score = 30.3 bits (65), Expect = 0.91
 Identities = 14/16 (87%), Positives = 14/16 (87%)
 Frame = +2

Query: 356 MPLDVLGRTRATLKES 403
           MPLDVLGRTRATL  S
Sbjct: 1   MPLDVLGRTRATLTVS 16


>SB_30664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +2

Query: 356 MPLDVLGRTRATL 394
           MPLDVLGRTRATL
Sbjct: 1   MPLDVLGRTRATL 13


>SB_41816| Best HMM Match : Peptidase_M10 (HMM E-Value=0)
          Length = 556

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 489 FMGDNWKPDSPARSSFSGLPGPIGKGEHADSFSVA 385
           + G    PD P R S  GLPG + +   +DSFS+A
Sbjct: 367 YQGFKVYPDYPKRISNWGLPGKVDELAPSDSFSLA 401


>SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)
          Length = 1197

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 112  PVSGPGEISRVESN*AAGSTPGGALPSIPLSFSFAT 5
            P S PG  S      A  STPG A+ SIP + S +T
Sbjct: 1015 PSSTPGAASSTTPGAAPSSTPGAAMSSIPGATSSST 1050


>SB_48355| Best HMM Match : Herpes_US9 (HMM E-Value=4.7)
          Length = 98

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +1

Query: 367 CPGPHARYTEGIS 405
           C GPHARYT+G++
Sbjct: 2   CSGPHARYTDGVN 14


>SB_17609| Best HMM Match : Herpes_US9 (HMM E-Value=4.7)
          Length = 98

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +1

Query: 367 CPGPHARYTEGIS 405
           C GPHARYT+G++
Sbjct: 2   CSGPHARYTDGVN 14


>SB_28753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +1

Query: 367 CPGPHARYTEGIS 405
           C GPHARYT+G++
Sbjct: 2   CSGPHARYTDGVN 14


>SB_37884| Best HMM Match : Ubie_methyltran (HMM E-Value=0.00014)
          Length = 399

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -3

Query: 468 PDSPARSSFSGLPGPIGKGEHADSFSVARVRPRTSKG 358
           P +    SF GL  P GK  H      + ++P  S G
Sbjct: 30  PSTTTLYSFKGLANPTGKDMHPTKVLASTLKPNNSTG 66


>SB_18807| Best HMM Match : Transketolase_N (HMM E-Value=2.9)
          Length = 256

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 413 PLPIGPGNPLKLLRAGESGFQ 475
           P+P+G GNP +LL    +GFQ
Sbjct: 59  PIPLGFGNPKQLLLNSVNGFQ 79


>SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2371

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 176  LVERFVWLIPVTNETLAC 229
            LV RFV ++PVT+ T AC
Sbjct: 1290 LVARFVRMLPVTHHTAAC 1307


>SB_50595| Best HMM Match : Herpes_US9 (HMM E-Value=2.5)
          Length = 101

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 356 MPLDVLGR-TRATLKESACSPLPIGPGNPLKLLRAGESGFQLSPIN 490
           MPLDVLGR  R T   +       G GN +K  RAG+   QL   N
Sbjct: 1   MPLDVLGRHARYTDGVNESFLRRKGVGNLVKHRRAGDRSLQLLIFN 46


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,597,569
Number of Sequences: 59808
Number of extensions: 353404
Number of successful extensions: 779
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)