Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0176X.Seq
         (494 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23517-11|AAY44017.1|  288|Caenorhabditis elegans Hypothetical p...    29   2.4  
AF022985-12|AAB69959.1|  319|Caenorhabditis elegans Collagen pro...    28   3.2  
AF022985-10|AAB69961.1|  325|Caenorhabditis elegans Collagen pro...    28   3.2  
U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical p...    27   5.7  
U50312-8|AAA92324.1|  294|Caenorhabditis elegans Collagen protei...    27   7.5  
AC024791-31|AAF60655.1|  181|Caenorhabditis elegans Hypothetical...    27   7.5  
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    27   9.9  
AC006743-4|AAF60502.1|  291|Caenorhabditis elegans Collagen prot...    27   9.9  

>U23517-11|AAY44017.1|  288|Caenorhabditis elegans Hypothetical
           protein D1022.9 protein.
          Length = 288

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 49  QEWSLRLNLTQHGKSHQARTPEGLTD*QLFLD 144
           Q W L L    H K + ARTP  + D ++F++
Sbjct: 59  QYWPLMLARFSHEKPYVARTPAAIADAEMFIN 90


>AF022985-12|AAB69959.1|  319|Caenorhabditis elegans Collagen
           protein 143 protein.
          Length = 319

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 483 GDNWKPDSPARSSFSGLPGPIGKGEHADS 397
           G+N +P +PA+S   G PGP G    A S
Sbjct: 152 GNNGQPGAPAQSGGRGPPGPRGPAGDAGS 180


>AF022985-10|AAB69961.1|  325|Caenorhabditis elegans Collagen
           protein 142 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 483 GDNWKPDSPARSSFSGLPGPIGKGEHADS 397
           G+N +P +PA+S   G PGP G    A S
Sbjct: 152 GNNGQPGAPAQSGGRGPPGPRGPAGDAGS 180


>U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical
           protein R144.2a protein.
          Length = 823

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 46  HQEWSLRLNLTQHGKSHQARTP 111
           H +W ++ NL +HG ++ A  P
Sbjct: 696 HMDWHVKQNLARHGSNNSAAVP 717


>U50312-8|AAA92324.1|  294|Caenorhabditis elegans Collagen protein
           145 protein.
          Length = 294

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 483 GDNWKPDSPARSSFSGLPGPIGK 415
           GDN +P +P +  F G PG  G+
Sbjct: 189 GDNGQPGTPGQDGFPGQPGADGQ 211


>AC024791-31|AAF60655.1|  181|Caenorhabditis elegans Hypothetical
           protein Y47G6A.3 protein.
          Length = 181

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 57  EPAA*FDSTREISPGPDTGRVDRL 128
           EP+A FD+  ++ PG    R+DR+
Sbjct: 100 EPSALFDNANDLLPGQKEERIDRM 123


>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein
            C10C6.1 protein.
          Length = 1565

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -2

Query: 160  HHHPPNQERAVNL-STLPVSGPGEISRVESN*AAGSTPGGALPS 32
            HHHP +     +  +TLP + P  +SR+ S+  + S       S
Sbjct: 1387 HHHPASTSSVASAPATLPSTTPSNLSRMASSSPSSSASNSGTSS 1430


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
            protein.
          Length = 1565

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -2

Query: 160  HHHPPNQERAVNL-STLPVSGPGEISRVESN*AAGSTPGGALPS 32
            HHHP +     +  +TLP + P  +SR+ S+  + S       S
Sbjct: 1387 HHHPASTSSVASAPATLPSTTPSNLSRMASSSPSSSASNSGTSS 1430


>AC006743-4|AAF60502.1|  291|Caenorhabditis elegans Collagen protein
           109 protein.
          Length = 291

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -3

Query: 483 GDNWKPDSPARSSFSGLPGPIG-KGEHADS 397
           G   +P +P R    G PGP+G  G   DS
Sbjct: 155 GQPGRPGNPGRPGSPGTPGPVGPNGASGDS 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,854,907
Number of Sequences: 27780
Number of extensions: 249153
Number of successful extensions: 730
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)