Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0176X.Seq
         (494 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          25   0.44 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.1  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   5.4  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   5.4  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 314 PVPLRRILIRRQ*VARHEAATPK 246
           P PL  +   +  VARH A TPK
Sbjct: 141 PTPLGAVATEKMFVARHLAETPK 163


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 398 ESACSPLPIGPGNPLKLLRA 457
           + + SPLP  P NP++ L+A
Sbjct: 13  DRSTSPLPRKPVNPVQELKA 32


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -1

Query: 194 RQIAPPIKNGHAPPPTESRKS 132
           RQ+   ++ GH  PP +  +S
Sbjct: 265 RQLNSDVQPGHGSPPVKQHRS 285


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 424 RPGQPAETTSCWGI 465
           RP +PA+TTS  GI
Sbjct: 48  RPREPAQTTSKAGI 61


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 424 RPGQPAETTSCWGI 465
           RP +PA+TTS  GI
Sbjct: 170 RPREPAQTTSKAGI 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,442
Number of Sequences: 438
Number of extensions: 3212
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)