Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0176X.Seq
         (494 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07360.1 68415.m00843 SH3 domain-containing protein contains ...    30   0.98 
At3g13784.1 68416.m01741 beta-fructosidase, putative / beta-fruc...    29   1.7  
At1g78080.1 68414.m09099 AP2 domain-containing transcription fac...    28   3.0  
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein...    28   4.0  
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein...    28   4.0  
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein...    28   4.0  
At4g00990.1 68417.m00133 transcription factor jumonji (jmjC) dom...    28   4.0  
At1g20670.1 68414.m02589 DNA-binding bromodomain-containing prot...    27   5.3  
At3g26480.1 68416.m03301 transducin family protein / WD-40 repea...    27   6.9  
At3g23540.1 68416.m02962 expressed protein ; expression supporte...    27   6.9  
At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A)            27   9.2  
At1g55120.1 68414.m06295 beta-fructosidase, putative / beta-fruc...    27   9.2  

>At2g07360.1 68415.m00843 SH3 domain-containing protein contains
           Pfam profile PF00018: SH3 domain
          Length = 1196

 Score = 29.9 bits (64), Expect = 0.98
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 401 SACSPLPIGPGNPLKLLRAGESGFQLSPI 487
           SA   LP+ PGNPL L RA +  F   P+
Sbjct: 293 SALRRLPLDPGNPLFLHRAAQGVFFADPV 321


>At3g13784.1 68416.m01741 beta-fructosidase, putative /
           beta-fructofuranosidase, putative / cell wall invertase,
           putative similar to beta-fructofuranosidase GI:402740
           from [Arabidopsis thaliana]
          Length = 569

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +1

Query: 349 VCDALRCPGPHARYTEGISMFSL--AYRPGQPAETTSCWGIGFPIIPH 486
           V D  +    HA  T+ I+  +L  A RP +P++   CW     I+P+
Sbjct: 77  VMDVNKTVWGHATSTDLINWITLSPAIRPSRPSDINGCWSGSVTILPN 124


>At1g78080.1 68414.m09099 AP2 domain-containing transcription factor
           RAP2.4 identical to AP2 domain containing protein
           GI:2281633 from [Arabidopsis thaliana]
          Length = 334

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
 Frame = -2

Query: 265 TRPRHLNNDAYLAG*SLVRYRN*PDKSLHQLRTAMHHHPPNQERAVNLSTLPVSGPGEIS 86
           T+P    +D    G SL+   N     +HQ+++ +HH  P      N S   +  P  + 
Sbjct: 69  TQPFSYGSDLQQTG-SLIGLNNLSSSQIHQIQSQIHHPLPPTHHNNNNSFSNLLSPKPLL 127

Query: 85  RVESN*AAGS--TPGGALPSIP 26
             +S   AGS    G  +PS P
Sbjct: 128 MKQSG-VAGSCFAYGSGVPSKP 148


>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative
          Length = 358

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = -3

Query: 486 MGDNWKPDSPARSSFSGLPGPIG----KGEHADSFS 391
           +GDNW   + ARSS+ G  G +G    +G H   +S
Sbjct: 269 IGDNWGTVARARSSYHGERGGVGLEAMRGVHVGGYS 304


>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative
          Length = 431

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = -3

Query: 486 MGDNWKPDSPARSSFSGLPGPIG----KGEHADSFS 391
           +GDNW   + ARSS+ G  G +G    +G H   +S
Sbjct: 342 IGDNWGTVARARSSYHGERGGVGLEAMRGVHVGGYS 377


>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative
          Length = 431

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = -3

Query: 486 MGDNWKPDSPARSSFSGLPGPIG----KGEHADSFS 391
           +GDNW   + ARSS+ G  G +G    +G H   +S
Sbjct: 342 IGDNWGTVARARSSYHGERGGVGLEAMRGVHVGGYS 377


>At4g00990.1 68417.m00133 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain
          Length = 840

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 25  KELTEGHHQEWSLRLNLTQHGKSHQARTPEG 117
           KEL+EG HQE   + N    GK ++ R P G
Sbjct: 238 KELSEGFHQERDGKKN--AEGKGYECRIPAG 266


>At1g20670.1 68414.m02589 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 652

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 190 KSLHQLRTAMHHHPPNQERAVNLSTLP 110
           K LH L +  H H PN +  +NL   P
Sbjct: 104 KLLHGLNSHSHRHSPNSQSDLNLDQTP 130


>At3g26480.1 68416.m03301 transducin family protein / WD-40 repeat
           family protein contains Pfam profile: PF00400 WD domain,
           G-beta repeat (5 copies, 2 below cutoff); related to
           LACK protective antigen (GI:13625467) [Leishmania
           donovani]
          Length = 764

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = +1

Query: 181 GAICLVNSGNERDSSLLNRRRYLGVAASCRATH*RRIKILLRGTGVFEPHEIEQ*QVCD 357
           G IC V + +   +  ++  R  G+AA C A H  R+++      +   H+I + Q+CD
Sbjct: 337 GFICYVKTRDICLTRTVSIDRSSGIAAFCTANH--RVQLY----NLLSDHDISEVQICD 389


>At3g23540.1 68416.m02962 expressed protein ; expression supported
           by MPSS
          Length = 568

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -2

Query: 190 KSLHQLRTAMHHHPPNQERAVNLSTLPVSGPGEISRVESN*AAGSTPG 47
           +S  QL ++   +PP++  +    T+  S PG +S+ ES    G  PG
Sbjct: 489 RSQDQLPSSSESNPPSETSSSLARTVTSSVPGSLSQKESE--TGDVPG 534


>At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A) 
          Length = 125

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -2

Query: 187 SLHQLRTAMHHHPPNQERAV 128
           S HQ RT  HHHP N    V
Sbjct: 19  SRHQRRTKSHHHPLNPPNPV 38


>At1g55120.1 68414.m06295 beta-fructosidase, putative /
           beta-fructofuranosidase, putative similar to
           beta-fructofuranosidase GI:402740
          Length = 594

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 418 AYRPGQPAETTSCWGIGFPIIPH 486
           A+ P QP++   CW     I+P+
Sbjct: 100 AFNPSQPSDINGCWSGSVTILPN 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,369,412
Number of Sequences: 28952
Number of extensions: 237259
Number of successful extensions: 534
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)