Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0173X.Seq
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism...    27   2.6  
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    26   4.6  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    26   6.1  

>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +2

Query: 95  VLRRSKNFTSNESIRIHPVIPINHYLGVLKTNKIEPRSYSIIPCTK--YSSSIFSRFEHS 268
           VL+ +K   +   + +HP +P   YL   K  +I   +YS +      Y+S I    EH 
Sbjct: 176 VLKIAKVKPTIHQMELHPYLPQTEYLEKHKKLQIHVSAYSPLANQNDAYNSDISKLIEHK 235

Query: 269 NLFKV 283
            L  +
Sbjct: 236 TLVDI 240


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +2

Query: 134 IRIHPVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSRFEHSNLFKVKL 289
           +++   +P   + G+      +P    I  C KY S+ +S   HS L  ++L
Sbjct: 213 VKLAKALPDAKFFGIFDW---DPHGLCIYSCFKYGSNAYSHEPHSQLRNLQL 261


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 92  FVLRRSKNFTSNESIRIHPVIPINHYLGVLK-TNKIEPRSYSIIPCTKY 235
           F ++ S + +++ SI  HP +PINH     K  N+    +   +P TK+
Sbjct: 149 FEVKNSLHDSTDLSITHHPHLPINHQGNTWKHANESLQSNQGPVPNTKF 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,733,281
Number of Sequences: 5004
Number of extensions: 53520
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)