Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0173X.Seq
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0090 + 14367033-14367279,14367402-14368205,14368314-143700...    29   4.8  
03_03_0053 + 14109636-14109948,14110075-14110302,14112030-141121...    29   4.8  
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467...    29   4.8  
04_01_0178 + 2006369-2006494,2006582-2006664,2007693-2007819,200...    28   8.4  
01_05_0005 - 16886553-16886946,16887079-16887404                       28   8.4  

>03_03_0090 +
           14367033-14367279,14367402-14368205,14368314-14370039,
           14370135-14370219,14370398-14370457,14370744-14370836
          Length = 1004

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 158 INHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSRFE 262
           I H L +LK  KI P   +I  C +YS    S F+
Sbjct: 819 ILHALHILKAEKIFPTESNIADCIRYSEMNISGFD 853


>03_03_0053 +
           14109636-14109948,14110075-14110302,14112030-14112181,
           14112305-14112578,14112687-14112739
          Length = 339

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +2

Query: 146 PVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSRFEHSNLFK 280
           P+  +  YLG+   NK+ P+ Y +  C K+ +  FS++ H++  K
Sbjct: 248 PIGCVPGYLGIFP-NKLSPKDYDVFGCIKWLND-FSKY-HNHALK 289


>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
            29646843-29646899,29647007-29647094,29647304-29647374,
            29647457-29647585,29647662-29648051,29648332-29648517,
            29648612-29648692,29648787-29648879,29648966-29649086,
            29649200-29649409,29649560-29649727,29649898-29650065,
            29650144-29650311,29650453-29650620,29650738-29650905,
            29651023-29651190,29651567-29651734,29652391-29652558,
            29652645-29652812,29655720-29655887,29656069-29656236,
            29656391-29656558,29656670-29656837,29657525-29657664,
            29658033-29658221,29658243-29658315,29658379-29658452,
            29658535-29658654,29658718-29658738,29658794-29658999,
            29659094-29659271,29660066-29660126,29660232-29660341,
            29660427-29660558,29661091-29661258,29661339-29661465,
            29661794-29661831,29663321-29663422,29663505-29663562,
            29663659-29663760,29663844-29663990,29664098-29664234,
            29664313-29664462,29664561-29664720,29665820-29665878,
            29666025-29666181,29666288-29666433,29666523-29666666,
            29667242-29667376
          Length = 2344

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -1

Query: 159  IGITGCIRIDSLEVKFLDRRKTNISE-SICQRCFHQSRTKVRGSKAIRYRPSS 4
            +G  GCIRID   +   D  K+ ++E S  Q   ++   +++   A++ R S+
Sbjct: 920  VGTAGCIRIDIETIGHTDLEKSKVAEVSKLQAALNEMEQRMQDVTAMQERESA 972


>04_01_0178 +
           2006369-2006494,2006582-2006664,2007693-2007819,
           2008579-2008638,2009606-2009735,2009821-2010047,
           2010226-2010318,2010395-2010466,2011392-2011532,
           2012045-2012047,2012387-2012443,2012909-2012995,
           2013081-2013116
          Length = 413

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/57 (31%), Positives = 23/57 (40%)
 Frame = +2

Query: 140 IHPVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSRFEHSNLFKVKLSAHLDTH 310
           I  V P  H+L     N     +    P   YSS+I   F H+N F   +   L TH
Sbjct: 53  IKMVPPGPHFLYYCSPNSYGQNNLHEKPHIDYSSTICDPFRHANEFAPTVGFFLTTH 109


>01_05_0005 - 16886553-16886946,16887079-16887404
          Length = 239

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 460 RNNFSIRYWSWNYRGC 507
           R+N S RYW W   GC
Sbjct: 90  RSNSSFRYWRWQPHGC 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,717,875
Number of Sequences: 37544
Number of extensions: 341574
Number of successful extensions: 726
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)