Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0173X.Seq
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY305845-1|AAR11989.1|  412|Caenorhabditis elegans nuclear recep...    30   1.9  
AC006675-5|AAK84557.2|  412|Caenorhabditis elegans Nuclear hormo...    30   1.9  
AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormo...    28   5.7  

>AY305845-1|AAR11989.1|  412|Caenorhabditis elegans nuclear receptor
           NHR-123 protein.
          Length = 412

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -1

Query: 147 GCIRIDSLEVKFLDRRKTN--ISESICQRCFHQSRTKVRG 34
           G  ++DSL    LD + TN  +   ICQ CFHQ   ++ G
Sbjct: 296 GVRQLDSLIKAMLDLQPTNEELCYMICQLCFHQVGKQLHG 335


>AC006675-5|AAK84557.2|  412|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 123 protein.
          Length = 412

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -1

Query: 147 GCIRIDSLEVKFLDRRKTN--ISESICQRCFHQSRTKVRG 34
           G  ++DSL    LD + TN  +   ICQ CFHQ   ++ G
Sbjct: 296 GVRQLDSLIKAMLDLQPTNEELCYMICQLCFHQVGKQLHG 335


>AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 98 protein.
          Length = 433

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -1

Query: 138 RIDSLEVKFLDRRKTN--ISESICQRCFHQSRTKVRGS 31
           ++D L    LD   T+  +S  ICQ CFHQ   K++G+
Sbjct: 320 QLDILINAMLDLEPTHEELSYMICQLCFHQVGKKLQGN 357


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,284,865
Number of Sequences: 27780
Number of extensions: 306046
Number of successful extensions: 710
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)