Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0172.Seq
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    32   0.096
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    31   0.17 
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    31   0.22 
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    29   0.68 
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    28   1.6  
SPAC5D6.04 |||auxin family transmembrane transporter |Schizosacc...    27   2.7  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    26   4.8  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    25   8.3  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 31.9 bits (69), Expect = 0.096
 Identities = 22/70 (31%), Positives = 36/70 (51%)
 Frame = -2

Query: 354 SFTLASSGDNSAIPTNPKTTIFPSVKNSGAFNFTLSGLVLFFLMTLLAFPQPPIITSYIG 175
           S T++SS  +S+ PT+  +TI  S  +S +F+ TLS   +    +  +   P   +S I 
Sbjct: 287 SSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSS--SPTSSSSTIS 344

Query: 174 SDSCGPVVSA 145
           S S  P  S+
Sbjct: 345 SSSSSPSSSS 354


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 480 IVRSTPWLP*GYGGNVPPPSGGYGGNVPPP 569
           I  + P +P GY G VP P GGY  +   P
Sbjct: 138 IPAAMPGMPSGYPGTVPIPQGGYNAHYSSP 167


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -3

Query: 377 SDQDMNGIASPS---RPAEIIPLSQRTQKPRYSP 285
           SD ++ G+  P    +PA  IPLS+R+  P Y+P
Sbjct: 30  SDPELIGLLKPDNVDKPANSIPLSKRSTSPSYAP 63


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 510 GYGGNVPPPSGGYGGNVPPP 569
           G G   PPP  G+G   PPP
Sbjct: 123 GVGYTAPPPPAGFGRGAPPP 142


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = -2

Query: 324 SAIPTNPKTTIFPSVKNSGAFNFTLSGLVLFFLMTLLAFPQPPIITSYIGSDSCGPVVSA 145
           +A  T      FP       F   +  ++  F+++LL     P +TSY G D+   V++ 
Sbjct: 292 AAAETENPAKAFPVAVRQTLFRIAIFYILSLFIVSLLISGADPRLTSYHGVDASPFVLAI 351

Query: 144 MWASFAAL 121
             A+  AL
Sbjct: 352 KDANIKAL 359


>SPAC5D6.04 |||auxin family transmembrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -2

Query: 330 DNSAIPTNPKTTIFPSVKNSGAFNFTLSGLVLFFLMTLLAFPQPPIITSYI 178
           D+SAI  N    +  S +  G F    S  +  F++ LL F  PP+ + +I
Sbjct: 236 DSSAISKNDNVQVETSNEEVGGFG-AASSKISKFIVLLLDFFSPPLYSLFI 285


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +2

Query: 98  SGSVQFKVRA-ANDAHIALTTGPQESDPMYEVMIGGWGNAKSVIRKNRTKPDKVKLKA 268
           S S +  VR+  N + +   T    + P+  V +    NA   I KN T P KVK+ A
Sbjct: 221 SASPRISVRSLGNSSVVRPPTRTSTTRPLSRVNVT---NASGSISKNSTSPSKVKVNA 275


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +2

Query: 275 FLTEGNIVVFGFVGIAELSPLDARVKLFHSYLGLIPNLSQFTTSE 409
           F   G   V G V +A    +  RVK   ++LG  P +   T SE
Sbjct: 573 FFIGGGKAVHGLVNLASSRNVSDRVKCMVNFLGTEPLVGLKTASE 617


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,012,910
Number of Sequences: 5004
Number of extensions: 65885
Number of successful extensions: 206
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)