Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0172.Seq
(727 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.011
SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08) 32 0.41
SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069) 32 0.54
SB_27124| Best HMM Match : NHL (HMM E-Value=6.4e-17) 31 0.95
SB_47281| Best HMM Match : Adaptin_N (HMM E-Value=0) 30 2.2
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_17864| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_47007| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051) 29 3.8
SB_48379| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_24276| Best HMM Match : Extensin_2 (HMM E-Value=2.1e-05) 29 5.1
SB_56047| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_48424| Best HMM Match : PSI (HMM E-Value=0.4) 29 5.1
SB_20027| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_4370| Best HMM Match : PSI (HMM E-Value=0.4) 29 5.1
SB_11163| Best HMM Match : DUF1104 (HMM E-Value=1.7) 28 6.7
SB_53604| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_12369| Best HMM Match : S-antigen (HMM E-Value=0.11) 28 6.7
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7) 28 8.9
SB_24277| Best HMM Match : EGF (HMM E-Value=2.4e-06) 28 8.9
SB_16514| Best HMM Match : Paxillin (HMM E-Value=3.7) 28 8.9
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 28 8.9
SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056) 28 8.9
SB_59679| Best HMM Match : Lectin_C (HMM E-Value=5.3e-10) 28 8.9
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/31 (54%), Positives = 18/31 (58%)
Frame = +3
Query: 489 STPWLP*GYGGNVPPPSGGYGGNVPPPSGGA 581
S P P GGN PPP GG+ PPP GGA
Sbjct: 940 SAPSQPPPPGGNAPPPPPPPGGSAPPPGGGA 970
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Frame = +3
Query: 516 GGNVPPPSGGYGGNV---PPPSGGA 581
GG+VPPP GGN PPP GG+
Sbjct: 916 GGSVPPPPPPPGGNAPLPPPPPGGS 940
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +3
Query: 516 GGNVPPPSGGYGGNVPPPSGGA 581
GG+ PPP GG PPP G A
Sbjct: 960 GGSAPPPGGGAPPLPPPPGGSA 981
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = +3
Query: 489 STPWLP*GYGGNVP---PPSGGYGGNVPPPSGG 578
S P P GGN P PP GG + PPP GG
Sbjct: 918 SVPPPPPPPGGNAPLPPPPPGGSAPSQPPPPGG 950
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 504 P*GYGGNVPPPSGGYGGNVPPPSGGA 581
P G + PPP GG PPP GG+
Sbjct: 937 PGGSAPSQPPPPGGNAPPPPPPPGGS 962
>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 37.5 bits (83), Expect = 0.011
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = +3
Query: 510 GYGGNVPPPSGGYGGNVPPPSGGAG 584
G GG PPP G GG PPP G G
Sbjct: 498 GQGGGPPPPGAGQGGGPPPPGAGQG 522
Score = 37.5 bits (83), Expect = 0.011
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = +3
Query: 510 GYGGNVPPPSGGYGGNVPPPSGGAG 584
G GG PPP G GG PPP G G
Sbjct: 531 GQGGGPPPPGAGQGGGPPPPGAGQG 555
Score = 34.3 bits (75), Expect = 0.10
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +3
Query: 510 GYGGNVPPPSGGYGGNVPPPSGGAG 584
G G PPP G GG PPP G G
Sbjct: 487 GQGWGQPPPGAGQGGGPPPPGAGQG 511
Score = 34.3 bits (75), Expect = 0.10
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +3
Query: 510 GYGGNVPPPSGGYGGNVPPPSGGAG 584
G GG PPP G G PPP G G
Sbjct: 509 GQGGGPPPPGAGQGWGQPPPGAGQG 533
Score = 34.3 bits (75), Expect = 0.10
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +3
Query: 510 GYGGNVPPPSGGYGGNVPPPSGGAG 584
G G PPP G GG PPP G G
Sbjct: 520 GQGWGQPPPGAGQGGGPPPPGAGQG 544
Score = 34.3 bits (75), Expect = 0.10
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +3
Query: 510 GYGGNVPPPSGGYGGNVPPPSGGAG 584
G GG PPP G G PPP G G
Sbjct: 542 GQGGGPPPPGAGQGWGQPPPGAGQG 566
Score = 34.3 bits (75), Expect = 0.10
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +3
Query: 510 GYGGNVPPPSGGYGGNVPPPSGGAG 584
G G PPP G GG PPP G G
Sbjct: 553 GQGWGQPPPGAGQGGGPPPPGAGQG 577
Score = 33.9 bits (74), Expect = 0.13
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 510 GYGGNVPPPSGGYGGNVPPPSGGAGIW 590
G GG PPP G G +PPP G ++
Sbjct: 595 GQGGGPPPPGAGQGWGLPPPGSGLHLY 621
Score = 32.7 bits (71), Expect = 0.31
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +3
Query: 510 GYGGNVPPPSGGYGGNVPPPSGGAG 584
G GG PPP G GG PP +G G
Sbjct: 564 GQGGGPPPPGAGQGGPPPPGAGQEG 588
Score = 32.3 bits (70), Expect = 0.41
Identities = 15/28 (53%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +3
Query: 504 P*GYGGNVPPPSG-GYGGNVPPPSGGAG 584
P G G PPP G G GG PPP G G
Sbjct: 581 PPGAGQEGPPPPGAGQGGGPPPPGAGQG 608
>SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08)
Length = 1052
Score = 32.3 bits (70), Expect = 0.41
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Frame = +3
Query: 429 HRLLENRSATDCTCSSCIVRSTPWL------P*GYGGNVPPPSGGYGGNVPPPSGGAG 584
+ +++ RS C+ S TPW P G GG PPP GG PPP G G
Sbjct: 169 YSIVDARSVITCSPGSP-TEDTPWTSVPPPPPPGPGGIPPPPPPIRGGVPPPPPMGGG 225
>SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069)
Length = 135
Score = 31.9 bits (69), Expect = 0.54
Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Frame = +3
Query: 510 GYG----GNVPPPSGGYGGNVPPPSGGAGI 587
GYG G PPP GY G PPP GI
Sbjct: 49 GYGYPPAGGYPPPQPGYAGGPPPPGIAPGI 78
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +3
Query: 510 GYGGNVPPPSGGYGGNVPPPSGGAG 584
GY G PPP G PPPSG G
Sbjct: 64 GYAGGPPPPGIAPGIGGPPPSGQYG 88
>SB_27124| Best HMM Match : NHL (HMM E-Value=6.4e-17)
Length = 415
Score = 31.1 bits (67), Expect = 0.95
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -1
Query: 241 GSIFPDDALSVSPASNHHL-IHRIRFLRACRERDVGIIRCSDFEL 110
GSIF D VS NH L + R + L C+ER++G D EL
Sbjct: 303 GSIFHDKTFIVSDLRNHVLRVFRQKGLTICKERNIGQRGGKDGEL 347
>SB_47281| Best HMM Match : Adaptin_N (HMM E-Value=0)
Length = 949
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 540 GGYGGNVPPPSGGAGIWVD 596
GG G + P P+GGAG+ VD
Sbjct: 695 GGIGSSAPTPAGGAGLLVD 713
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +3
Query: 522 NVPPPSGGYGGNVPPPSG 575
N+PPP GG G PPP G
Sbjct: 457 NLPPPPGGMRGMPPPPMG 474
>SB_17864| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 911
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 516 GGNVPPPSGGYGGNVPPPSG 575
G + PPP GY G PPP+G
Sbjct: 639 GQHPPPPPAGYPGYGPPPAG 658
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Frame = +3
Query: 504 P*GYGG-NVPPPSGGY--GGNVPPPSGG 578
P GY G + PP+GGY G + PPP G
Sbjct: 621 PGGYPGTHTAPPAGGYPTGQHPPPPPAG 648
>SB_47007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1174
Score = 29.1 bits (62), Expect = 3.8
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = +2
Query: 320 AELSPLDARVKLFHSYLGL--IPNLSQFTTSESAQAGVPQAPGKSKCHRLHL*QLHCTQH 493
AE P ARV+ HS + N + +E Q VPQ+PG+ K + + +L
Sbjct: 928 AEHEPELARVRESHSRENATHVKNEERKLDTEEGQVTVPQSPGEDKKLVVQVEKLPDRIE 987
Query: 494 PLATLRLRRKRTPSVWRLRRKRTPS 568
T + R+RT + + RKR S
Sbjct: 988 IDVTAIMGRRRTRAATKGSRKRRSS 1012
>SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)
Length = 421
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +3
Query: 504 P*GYGGNVPPPSGGYGGNVPPPSGGAG 584
P GY G PP+GGY G PPP G G
Sbjct: 239 PGGYPG--APPAGGYPG-APPPGGYPG 262
>SB_48379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 108
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +2
Query: 509 RLRRKRTPSVWRLRRKRTPSVWRSRYMG*CFRRSSTSWR-RCGRTGLLRRSLCMWLVRFT 685
R + R VWR + R VWRS+ R WR + R G + RS + + F
Sbjct: 42 RSKNNRLGGVWRSKNNRLGGVWRSKN-----NRLGGVWRSKNNRLGGVWRSAMVRIPAFN 96
Query: 686 KVPRSLV 706
+ P L+
Sbjct: 97 QKPGHLI 103
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = -2
Query: 348 TLASSGDNSAIPT----NPKTTIFPSVKNSGAFNFTLSGLVLFFLMTLLAFPQPPIITSY 181
TL ++ ++ PT +P T +PS+ S NFT + V+F T A P IT+
Sbjct: 224 TLRTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSITAS 283
Query: 180 I 178
I
Sbjct: 284 I 284
>SB_24276| Best HMM Match : Extensin_2 (HMM E-Value=2.1e-05)
Length = 449
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 480 IVRSTPWLP*GYGGNVP-PPSGGYGGNVPPPSGGAG 584
I+ STP P G G+ P PP G G + PP G G
Sbjct: 66 IMGSTPNPPKGIMGSTPNPPKGIMGSTLNPPKGIMG 101
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 480 IVRSTPWLP*GYGGNVPPPSGGYGGNVP-PPSGGAG 584
I+ STP P G G++P P G G+ P PP G G
Sbjct: 187 IMGSTPNPPKGIMGSLPNPPKGIMGSTPNPPKGIMG 222
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 480 IVRSTPWLP*GYGGNVPPPSGGYGGNVP-PPSGGAG 584
I+ STP P G G+ P P G G+ P PP G G
Sbjct: 55 IMGSTPNPPKGIMGSTPNPPKGIMGSTPNPPKGIMG 90
>SB_56047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 440
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 516 GGNVPPPSGGYGGNVPPP 569
GG +PPP GG+ PPP
Sbjct: 288 GGMLPPPFGGHPAAAPPP 305
>SB_48424| Best HMM Match : PSI (HMM E-Value=0.4)
Length = 175
Score = 28.7 bits (61), Expect = 5.1
Identities = 9/15 (60%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
Frame = -2
Query: 495 GCCVQCSCY-RCSRW 454
GCC+ C C RCS+W
Sbjct: 104 GCCIYCCCCRRCSKW 118
>SB_20027| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -2
Query: 423 PACA-DSDVVNWERFGIRPRYEWNSFTLASSGDNSAIPTNPKTT 295
P C ++ V + RP+ EW S ++ + D SA+P KTT
Sbjct: 84 PTCTGNTPEVKCKTIVARPKREWASGSVPNEKDESALPDAIKTT 127
>SB_4370| Best HMM Match : PSI (HMM E-Value=0.4)
Length = 175
Score = 28.7 bits (61), Expect = 5.1
Identities = 9/15 (60%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
Frame = -2
Query: 495 GCCVQCSCY-RCSRW 454
GCC+ C C RCS+W
Sbjct: 104 GCCIYCCCCRRCSKW 118
>SB_11163| Best HMM Match : DUF1104 (HMM E-Value=1.7)
Length = 282
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 227 RKNRTKPDKVKLKAPEFLTEGNIVVFGFVGI 319
RK +T PD++ + EFL+EG V F V +
Sbjct: 42 RKGQTDPDEIPVVDDEFLSEGKRVDFVLVTV 72
>SB_53604| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 28.3 bits (60), Expect = 6.7
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
Frame = +2
Query: 353 LFHSYLGLIPNLSQFTTSESAQAGVPQAPGKSKC-HRLHL*QLHCTQHPLATLRLRRKRT 529
L H Y+ ++ + +F E+ + + G C H H Q+H H +T RKRT
Sbjct: 179 LNHLYVTMVTSSKRFAAFEAGRLDLRFHSGTQSCTHHAHT-QVHAKAHARSTHAGTRKRT 237
Query: 530 PSVWRLRRKRTPSVWRSRYMG*CFRRSSTSWRRCGRTGLLRRSL 661
R + RT + R+ C + W+ G LR ++
Sbjct: 238 ----RTQYARTTEIKHVRF---CVNAALLLWQHV--IGKLRENI 272
>SB_12369| Best HMM Match : S-antigen (HMM E-Value=0.11)
Length = 1123
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 227 RKNRTKPDKVKLKAPEFLTEGNIVVFGFVGI 319
RK +T PD++ + EFL+EG V F V +
Sbjct: 42 RKGQTDPDEIPVVDDEFLSEGKRVDFVLVTV 72
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Frame = +3
Query: 510 GYGGNVPPPSG-----GYGGNV-PPPSGGAGIW 590
GYGG P G GYGG P GG+G+W
Sbjct: 1284 GYGGYGGNPQGGYGFAGYGGQYGGPRGGGSGVW 1316
>SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7)
Length = 225
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 259 IESPGILNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEPFPV-YYV 405
I + GI + + FWV + S + G I W+DP+P V YY+
Sbjct: 3 IATSGITSAEKRMVFWVDFRSANLVLGSGATVIA--QWTDPDPLEVGYYI 50
>SB_24277| Best HMM Match : EGF (HMM E-Value=2.4e-06)
Length = 433
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 480 IVRSTPWLP*GYGGNVPPPSGGYGGNVP-PPSGGAG 584
I+ STP P G G+ P P G G+ P PP G G
Sbjct: 227 IMGSTPNPPKGIMGSTPNPPKGIMGSTPNPPKGIMG 262
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 480 IVRSTPWLP*GYGGNVPPPSGGYGGNVP-PPSGGAG 584
I+ STP P G G+ P P G G+ P PP G G
Sbjct: 238 IMGSTPNPPKGIMGSTPNPPKGIMGSTPNPPKGIMG 273
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 480 IVRSTPWLP*GYGGNVPPPSGGYGGNVP-PPSGGAG 584
I+ STP P G G+ P P G G+ P PP G G
Sbjct: 249 IMGSTPNPPKGIMGSTPNPPKGIMGSTPNPPKGIMG 284
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 480 IVRSTPWLP*GYGGNVPPPSGGYGGNVP-PPSGGAG 584
I+ STP P G G+ P P G G+ P PP G G
Sbjct: 260 IMGSTPNPPKGIMGSTPNPPKGIMGSTPNPPKGIMG 295
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 480 IVRSTPWLP*GYGGNVPPPSGGYGGNVP-PPSGGAG 584
I+ STP P G G+ P P G G+ P PP G G
Sbjct: 271 IMGSTPNPPKGIMGSTPNPPKGIMGSTPNPPKGIMG 306
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 480 IVRSTPWLP*GYGGNVPPPSGGYGGNVP-PPSGGAG 584
I+ STP P G G+ P P G G+ P PP G G
Sbjct: 282 IMGSTPNPPKGIMGSTPNPPKGIMGSTPNPPKGIMG 317
>SB_16514| Best HMM Match : Paxillin (HMM E-Value=3.7)
Length = 311
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 191 MIGGWGNAKSVIRKNRTKPDKVKLKAPEFLTEGN 292
++GG GN ++ R + T P+ V + P +L +G+
Sbjct: 125 LMGGNGNTGALTRTSNTNPNMVFEEKPAYLADGD 158
>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
Length = 768
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +3
Query: 495 PWLP*GYGGNVPPPSGGYGGNVPPPSGGAG 584
P LP G PPP GG G PPP G G
Sbjct: 681 PPLPGGAAPPPPPPIGG-GAPPPPPPGFGG 709
>SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056)
Length = 245
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +3
Query: 498 WLP*GYGGNVPPPSGGYGGNVPPP 569
W P GG PPP GG G PPP
Sbjct: 207 WGPPPMGG--PPPMGGPPGGYPPP 228
>SB_59679| Best HMM Match : Lectin_C (HMM E-Value=5.3e-10)
Length = 849
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/61 (24%), Positives = 25/61 (40%)
Frame = -2
Query: 462 SRWHFDFPGACGTPACADSDVVNWERFGIRPRYEWNSFTLASSGDNSAIPTNPKTTIFPS 283
S + + CG+ C + VV R+ I P + F S SA+P+ + P
Sbjct: 706 STYGSSYDTGCGSTGCGNMGVVKHIRYNINPPVQPMPFNPYGSSYGSALPSPIGMPLIPG 765
Query: 282 V 280
+
Sbjct: 766 M 766
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,159,015
Number of Sequences: 59808
Number of extensions: 541067
Number of successful extensions: 2058
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2003
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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