Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0172.Seq
(727 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 33 0.16
U28731-7|AAA68294.2| 120|Caenorhabditis elegans Hypothetical pr... 30 1.5
U58748-9|AAB52969.3| 542|Caenorhabditis elegans Hypothetical pr... 30 1.9
U58748-8|AAM97986.1| 497|Caenorhabditis elegans Hypothetical pr... 30 1.9
U58748-7|AAM97987.1| 399|Caenorhabditis elegans Hypothetical pr... 30 1.9
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 30 1.9
U58758-7|AAO38576.1| 220|Caenorhabditis elegans Hypothetical pr... 29 2.6
U58758-4|AAK68614.1| 914|Caenorhabditis elegans Hypothetical pr... 29 2.6
U58758-3|AAK68615.1| 905|Caenorhabditis elegans Hypothetical pr... 29 2.6
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 29 2.6
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 29 2.6
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 29 3.4
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 29 3.4
AF016427-10|AAB65348.1| 301|Caenorhabditis elegans Hypothetical... 29 3.4
AC006834-6|AAF40004.1| 233|Caenorhabditis elegans Hypothetical ... 29 3.4
Z83120-6|CAB76722.1| 809|Caenorhabditis elegans Hypothetical pr... 29 4.5
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 4.5
Z74032-9|CAA98464.2| 80|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 5.9
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 5.9
U23523-6|AAC46561.1| 86|Caenorhabditis elegans Hypothetical pr... 28 5.9
U58753-5|AAC24434.2| 348|Caenorhabditis elegans Hypothetical pr... 28 7.8
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 28 7.8
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +3
Query: 510 GYGGNVPPPSGGYGGNVPPPSGGAGIW 590
G G+ PP GG GG PPP GG G +
Sbjct: 418 GAPGSYGPPQGGPGGFGPPPPGGPGAY 444
Score = 32.7 bits (71), Expect = 0.27
Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +3
Query: 495 PWLP*GYGGNVPPPSGGYG--GNVPPPSGGAG 584
P P G GG PPP GG G G+ PP GG G
Sbjct: 400 PQGPGGPGGYGPPPPGGPGAPGSYGPPQGGPG 431
Score = 31.1 bits (67), Expect = 0.84
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +3
Query: 510 GYGGNVPPPSGGYGGNVPPPSG 575
G GG PPP GG G PPP+G
Sbjct: 429 GPGGFGPPPPGGPGAYGPPPTG 450
>U28731-7|AAA68294.2| 120|Caenorhabditis elegans Hypothetical
protein F12A10.1 protein.
Length = 120
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +3
Query: 504 P*GYGGNVPPPSGGYGGNVPPPSGG 578
P GYGG P GYGG P GG
Sbjct: 64 PGGYGGGYPGGYSGYGGGYPGMYGG 88
>U58748-9|AAB52969.3| 542|Caenorhabditis elegans Hypothetical
protein ZK180.5a protein.
Length = 542
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Frame = +3
Query: 495 PWLP*GYGGNVPPPS----GGYGGNVPPPSGGAG 584
P P GYG PPP GG GG P GAG
Sbjct: 56 PRPPIGYGAPPPPPPPPAFGGLGGGAAYPGAGAG 89
>U58748-8|AAM97986.1| 497|Caenorhabditis elegans Hypothetical
protein ZK180.5b protein.
Length = 497
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Frame = +3
Query: 495 PWLP*GYGGNVPPPS----GGYGGNVPPPSGGAG 584
P P GYG PPP GG GG P GAG
Sbjct: 56 PRPPIGYGAPPPPPPPPAFGGLGGGAAYPGAGAG 89
>U58748-7|AAM97987.1| 399|Caenorhabditis elegans Hypothetical
protein ZK180.5c protein.
Length = 399
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Frame = +3
Query: 495 PWLP*GYGGNVPPPS----GGYGGNVPPPSGGAG 584
P P GYG PPP GG GG P GAG
Sbjct: 56 PRPPIGYGAPPPPPPPPAFGGLGGGAAYPGAGAG 89
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +3
Query: 498 WLP*GYGGNVPPPSGGYGGNVPPPSGGAGIW 590
W P G+GG P GG+GGN GG G W
Sbjct: 20 WGPGGWGGG-PGRWGGWGGNRWGGGGGPGGW 49
>U58758-7|AAO38576.1| 220|Caenorhabditis elegans Hypothetical
protein ZK1127.9d protein.
Length = 220
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 501 LP*GYGGNVPPPSGGYGGNVPPPSGGAGIW 590
+P G GG +PP GGYG P+GG G +
Sbjct: 93 MPPGRGGYMPPYRGGYG---VAPNGGPGAY 119
>U58758-4|AAK68614.1| 914|Caenorhabditis elegans Hypothetical
protein ZK1127.9a protein.
Length = 914
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 501 LP*GYGGNVPPPSGGYGGNVPPPSGGAGIW 590
+P G GG +PP GGYG P+GG G +
Sbjct: 102 MPPGRGGYMPPYRGGYG---VAPNGGPGAY 128
>U58758-3|AAK68615.1| 905|Caenorhabditis elegans Hypothetical
protein ZK1127.9b protein.
Length = 905
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 501 LP*GYGGNVPPPSGGYGGNVPPPSGGAGIW 590
+P G GG +PP GGYG P+GG G +
Sbjct: 93 MPPGRGGYMPPYRGGYG---VAPNGGPGAY 119
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +3
Query: 504 P*GYGGNVPPPSGGYGGNVPPPSGGAG 584
P G+GG PP G G PP GG G
Sbjct: 183 PPGHGGQGGPPGHGGMGGPPPGQGGPG 209
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +3
Query: 504 P*GYGGNVPPPSGGYGGNVPPPSGGAG 584
P G+GG PP G G PP GG G
Sbjct: 463 PPGHGGQGGPPGHGGMGGPPPGQGGPG 489
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = +3
Query: 498 WLP*GYGGNVP---PPSGGYGGNVPPP 569
W G G ++P PP GG GG +PPP
Sbjct: 650 WYGSGGGSSMPMPVPPPGGLGGFMPPP 676
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = +3
Query: 498 WLP*GYGGNVP---PPSGGYGGNVPPP 569
W G G ++P PP GG GG +PPP
Sbjct: 650 WYGSGGGSSMPMPVPPPGGLGGFMPPP 676
>AF016427-10|AAB65348.1| 301|Caenorhabditis elegans Hypothetical
protein F32D1.7 protein.
Length = 301
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 392 GKGSGSDQDMNGIASPSRPAEIIPLSQRTQKPRYSP 285
G GSGS D +G + P+R + +P + PR P
Sbjct: 159 GSGSGSGNDSSGSSGPTRMSGQVPSTSGPPPPRPPP 194
>AC006834-6|AAF40004.1| 233|Caenorhabditis elegans Hypothetical
protein ZK973.9 protein.
Length = 233
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +3
Query: 510 GYGGNVPPPSGGYGGNVPPPSGGAG 584
GY G PPP GY G PPP G
Sbjct: 207 GYPGGPPPPPHGYEG-YPPPGAQPG 230
>Z83120-6|CAB76722.1| 809|Caenorhabditis elegans Hypothetical
protein R06A4.9 protein.
Length = 809
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Frame = +3
Query: 516 GGNVPPPSGGYGGNVPPPS--GGAG 584
G PPP G YGG PP GG G
Sbjct: 630 GWQRPPPQGSYGGQGPPQGSYGGQG 654
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Frame = +3
Query: 519 GNVPPPSG---GYGGNVPPPSGGA 581
G +PPP G G+ G PPP GG+
Sbjct: 1557 GGLPPPHGGMNGWRGGPPPPRGGS 1580
>Z74032-9|CAA98464.2| 80|Caenorhabditis elegans Hypothetical
protein F35B12.7 protein.
Length = 80
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = +3
Query: 510 GYGGNVPPPSGGYGGNVPPPSGGAG 584
GYGG P GGYGG P GG G
Sbjct: 45 GYGGR--GPYGGYGGRGPYGYGGRG 67
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Frame = +3
Query: 504 P*GYGGNVPPPSGG--YGGNVPPP 569
P G GG PPP G Y G +PPP
Sbjct: 327 PPGMGGMPPPPPPGMRYPGGMPPP 350
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Frame = +3
Query: 504 P*GYGGNVPPPSGG--YGGNVPPP 569
P G GG PPP G Y G +PPP
Sbjct: 337 PPGMGGMPPPPPPGMRYPGGMPPP 360
>U23523-6|AAC46561.1| 86|Caenorhabditis elegans Hypothetical
protein F53A9.6 protein.
Length = 86
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = +3
Query: 513 YG-GNVPPPSGGYGGNVPPPSGGA 581
YG G P GG+GG PPP GA
Sbjct: 4 YGNGGYNAPYGGHGGYAPPPVHGA 27
>U58753-5|AAC24434.2| 348|Caenorhabditis elegans Hypothetical
protein W03B1.6 protein.
Length = 348
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -2
Query: 96 ETGKNWY*RLSSVATSMTLAMIVV 25
ET + WY +LSS +T+M +A++ V
Sbjct: 15 ETFEKWYLKLSSTSTAMLIAILFV 38
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +3
Query: 504 P*GYGGNVPPPSGGYGGNVPPPSGGAG 584
P G GN P GGYG P P G +G
Sbjct: 263 PPGPPGNNGAPGGGYGVGPPGPPGPSG 289
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,777,694
Number of Sequences: 27780
Number of extensions: 390042
Number of successful extensions: 1689
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1665
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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