Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0172.Seq
(727 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g10300.3 68416.m01236 calcium-binding EF hand family protein ... 39 0.003
At3g10300.2 68416.m01235 calcium-binding EF hand family protein ... 39 0.003
At3g10300.1 68416.m01234 calcium-binding EF hand family protein ... 39 0.003
At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid t... 36 0.021
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 32 0.34
At3g06750.1 68416.m00800 hydroxyproline-rich glycoprotein family... 32 0.45
At1g76490.1 68414.m08899 3-hydroxy-3-methylglutaryl-CoA reductas... 31 0.78
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 30 1.4
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 30 1.8
At5g58840.1 68418.m07373 subtilase family protein contains simil... 30 1.8
At1g29380.1 68414.m03592 hypothetical protein 30 1.8
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si... 30 1.8
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 29 2.4
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 29 4.1
At5g45350.1 68418.m05567 proline-rich family protein contains pr... 29 4.1
At5g19800.1 68418.m02353 hydroxyproline-rich glycoprotein family... 29 4.1
At1g66940.2 68414.m07609 protein kinase-related 29 4.1
At1g66940.1 68414.m07608 protein kinase-related 29 4.1
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 29 4.1
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 28 5.5
At2g30600.2 68415.m03729 BTB/POZ domain-containing protein conta... 28 5.5
At2g30600.1 68415.m03728 BTB/POZ domain-containing protein conta... 28 5.5
At1g74380.1 68414.m08617 galactosyl transferase GMA12/MNN10 fami... 28 5.5
At1g30370.1 68414.m03713 lipase class 3 family protein similar t... 28 5.5
At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family... 28 7.2
At5g13210.1 68418.m01516 expressed protein 28 7.2
At3g57800.2 68416.m06443 basic helix-loop-helix (bHLH) family pr... 28 7.2
At3g57800.1 68416.m06442 basic helix-loop-helix (bHLH) family pr... 28 7.2
At3g52460.1 68416.m05769 hydroxyproline-rich glycoprotein family... 28 7.2
At2g05540.1 68415.m00586 glycine-rich protein 28 7.2
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro... 27 9.6
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro... 27 9.6
At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi... 27 9.6
At4g21620.1 68417.m03134 glycine-rich protein 27 9.6
>At3g10300.3 68416.m01236 calcium-binding EF hand family protein low
similarity to SP|P12815 Programmed cell death protein 6
(Probable calcium-binding protein ALG-2) {Mus musculus};
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 335
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/27 (62%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = +3
Query: 510 GYGGNVPPPSGGYG--GNVPPPSGGAG 584
GYGGN PPP YG GN PPP G +G
Sbjct: 12 GYGGNPPPPQPPYGSTGNNPPPYGSSG 38
Score = 34.3 bits (75), Expect = 0.083
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = +3
Query: 495 PWLP*GYGGNVPPPSGGYGGNVPPPSGGA 581
P P G GN PPP G G N PPP G +
Sbjct: 20 PQPPYGSTGNNPPPYGSSGSNPPPPYGSS 48
>At3g10300.2 68416.m01235 calcium-binding EF hand family protein low
similarity to SP|P12815 Programmed cell death protein 6
(Probable calcium-binding protein ALG-2) {Mus musculus};
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 324
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/27 (62%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = +3
Query: 510 GYGGNVPPPSGGYG--GNVPPPSGGAG 584
GYGGN PPP YG GN PPP G +G
Sbjct: 12 GYGGNPPPPQPPYGSTGNNPPPYGSSG 38
Score = 34.3 bits (75), Expect = 0.083
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = +3
Query: 495 PWLP*GYGGNVPPPSGGYGGNVPPPSGGA 581
P P G GN PPP G G N PPP G +
Sbjct: 20 PQPPYGSTGNNPPPYGSSGSNPPPPYGSS 48
>At3g10300.1 68416.m01234 calcium-binding EF hand family protein low
similarity to SP|P12815 Programmed cell death protein 6
(Probable calcium-binding protein ALG-2) {Mus musculus};
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 232
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/27 (62%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = +3
Query: 510 GYGGNVPPPSGGYG--GNVPPPSGGAG 584
GYGGN PPP YG GN PPP G +G
Sbjct: 12 GYGGNPPPPQPPYGSTGNNPPPYGSSG 38
Score = 34.3 bits (75), Expect = 0.083
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = +3
Query: 495 PWLP*GYGGNVPPPSGGYGGNVPPPSGGA 581
P P G GN PPP G G N PPP G +
Sbjct: 20 PQPPYGSTGNNPPPYGSSGSNPPPPYGSS 48
>At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to auxin
down regulated GB:X69640 GI:296442 from [Glycine max];
contains Pfam profile PF00234: Protease inhibitor/seed
storage/LTP family
Length = 297
Score = 36.3 bits (80), Expect = 0.021
Identities = 16/26 (61%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 510 GYGGNVPPPS-GGYGGNVPPPSGGAG 584
G GG+ PPP GG GG PPP GG G
Sbjct: 47 GGGGSKPPPHHGGKGGGKPPPHGGKG 72
Score = 34.3 bits (75), Expect = 0.083
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = +3
Query: 510 GYGGNVPPPSGGYGGNVPPPSGGAG 584
G GG PPP GG GG P GG G
Sbjct: 59 GKGGGKPPPHGGKGGGPPHHGGGGG 83
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +3
Query: 525 VPPPSGGYGGNVPPPSGGAG 584
VPPPS GY PP GG G
Sbjct: 185 VPPPSSGYPPYGPPSGGGGG 204
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 32.3 bits (70), Expect = 0.34
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = +3
Query: 501 LP*GYGGNVPPPSGGYGG---NVPPPSGGAG 584
+P G N PPPSG +GG N PPPSG G
Sbjct: 187 MPGGPLSNGPPPSGMHGGHLSNGPPPSGMPG 217
Score = 31.5 bits (68), Expect = 0.59
Identities = 17/30 (56%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +3
Query: 504 P*GYGGNVPPPSGGYGG---NVPPPSGGAG 584
P G G ++PPPSG GG N PPPSG G
Sbjct: 174 PMGPGMSMPPPSGMPGGPLSNGPPPSGMHG 203
>At3g06750.1 68416.m00800 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 147
Score = 31.9 bits (69), Expect = 0.45
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Frame = +3
Query: 462 CT-CSSCIVRSTPWLP*GYGGNVPPPSGGYGG-----NVPPPSGGAGI 587
CT CSSC P +P Y PPPS GG + PPPS G+
Sbjct: 32 CTMCSSCDNPCNP-VPSSYSPPPPPPSSSGGGGSYYYSPPPPSSSGGV 78
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 510 GYGGNVPPPSGGYGGNVPPPS 572
GYGG PPP G G PPP+
Sbjct: 88 GYGGYYPPPYYGNYGTPPPPN 108
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 528 PPPSGGYGGNVPPPSGGAG 584
PPPS G PPP GG G
Sbjct: 70 PPPSSSGGVKYPPPYGGDG 88
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/23 (56%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Frame = +3
Query: 516 GGNVPPPSGG--YGGNVPPPSGG 578
G PPP GG YGG PPP G
Sbjct: 77 GVKYPPPYGGDGYGGYYPPPYYG 99
>At1g76490.1 68414.m08899 3-hydroxy-3-methylglutaryl-CoA reductase 1
/ HMG-CoA reductase 1 (HMG1) identical to HMG-CoA
reductase 1 [SP|P14891]
Length = 592
Score = 31.1 bits (67), Expect = 0.78
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +1
Query: 562 PLRLEEPVYGLMFQEVKYLLAPLWEDRTAQEKPLYVARAVHEGATI 699
PL L V+ +F V Y L W D+ PL+V GA I
Sbjct: 54 PLYLTNAVFFTLFFSVAYYLLHRWRDKIRYNTPLHVVTITELGAII 99
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +3
Query: 516 GGNVPPPSGGYGGNVPPPSGG 578
GG PPP GG PPP GG
Sbjct: 676 GGGPPPPPPPPGGGPPPPPGG 696
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +3
Query: 516 GGNVPPPSGGYGGNVPPPSGG 578
GG PPP GG PPP GG
Sbjct: 677 GGPPPPPPPPGGGPPPPPGGG 697
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +3
Query: 516 GGNVPPPSGGYGGNVPPPSGGAG 584
GG PPP GG PPP G G
Sbjct: 687 GGGPPPPPGGGPPPPPPPPGALG 709
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +3
Query: 510 GYGGNVPPPSGGYGGNVPPPSGGAG 584
GYGGN GGYGGN GG+G
Sbjct: 162 GYGGN---SGGGYGGNAAGGYGGSG 183
>At5g58840.1 68418.m07373 subtilase family protein contains
similarity to prepro-cucumisin GI:807698 from [Cucumis
melo]; non-consensus acceptor site TT at exon 6
Length = 713
Score = 29.9 bits (64), Expect = 1.8
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 4/119 (3%)
Frame = -2
Query: 588 IYRLLQTEGVRFLRSLQTEGVRFLRSLRVARGCCVQCSCYRCSRWHFDFPG-ACGTPACA 412
+Y + +++ + FL L SL++ G V C+ R + ++P + P
Sbjct: 565 VYEIGKSDHIAFLCGLNYNAT----SLKLIAGEAVTCTGKTLPR-NLNYPSMSAKLPKSE 619
Query: 411 DSDVVNWERFGIR---PRYEWNSFTLASSGDNSAIPTNPKTTIFPSVKNSGAFNFTLSG 244
S +V + R P + S + + G N + +P SVK +F T+SG
Sbjct: 620 SSFIVTFNRTVTNVGTPNSTYKSKIVLNHGSNLKVEVSPSVLSMKSVKEKQSFTVTVSG 678
>At1g29380.1 68414.m03592 hypothetical protein
Length = 228
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 510 GYGGNVPPPSGGYGGNVPPPSGGAG 584
GYGG P GG GG+ +GG G
Sbjct: 106 GYGGGTPGGGGGGGGDTGAGAGGGG 130
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 516 GGNVPPPSGGYGGNVPPPSGGAG 584
GG+V GGYGG P GG G
Sbjct: 97 GGDVGGGGGGYGGGTPGGGGGGG 119
>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
similar to chloroplast membrane protein (ALBINO3)
(GI:3927828) [Arabidopsis thaliana]
Length = 1013
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 516 GGNVPPPSGGYGGNVPPPSGGAG 584
GG+ PPS G G PP +GG G
Sbjct: 410 GGSGSPPSTGGGSGSPPSTGGGG 432
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 516 GGNVPPPSGGYGGNVPPPSGGAG 584
GG+ PPS G GG P GG G
Sbjct: 420 GGSGSPPSTGGGGGSPSKGGGGG 442
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/26 (61%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = +3
Query: 510 GYGGNVP--PPSGGYGGNVPPPSGGA 581
GYGGN +GGYGGN PP SG A
Sbjct: 164 GYGGNSSYGGNAGGYGGN-PPYSGNA 188
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +3
Query: 498 WLP*GYGGNVPPPSGGYGGNVPPPS 572
W GY G P P GGYG PP+
Sbjct: 342 WNGGGYYGYPPQPQGGYGYAAQPPT 366
>At5g45350.1 68418.m05567 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 177
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 510 GYGGNVPPPSGGYGGNVPPPSGG 578
GYGG PP+ GYGG P P G
Sbjct: 66 GYGGY--PPAPGYGGYPPAPGHG 86
>At5g19800.1 68418.m02353 hydroxyproline-rich glycoprotein family
protein similar to extensin [Catharanthus roseus]
gi|1486263|dbj|BAA13175; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 96
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3
Query: 528 PPPSGGYGGNVPPPSGGAGIW 590
PPP YG PPP G +W
Sbjct: 71 PPPPSKYGRVYPPPPPGKSLW 91
>At1g66940.2 68414.m07609 protein kinase-related
Length = 309
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 323 ELSPLDARVKLFHSYLGLIPNLSQFTTSESAQAGVPQAPGK 445
ELS V +F+ ++PNLS +T E V ++P K
Sbjct: 120 ELSRTYKSVTIFYQCSSVLPNLSSYTCPEIGPISVSESPEK 160
>At1g66940.1 68414.m07608 protein kinase-related
Length = 332
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 323 ELSPLDARVKLFHSYLGLIPNLSQFTTSESAQAGVPQAPGK 445
ELS V +F+ ++PNLS +T E V ++P K
Sbjct: 120 ELSRTYKSVTIFYQCSSVLPNLSSYTCPEIGPISVSESPEK 160
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 528 PPPSGGYGGNVPPPSGGAG 584
PPP G G N PPP AG
Sbjct: 753 PPPLGAKGSNAPPPPPPAG 771
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 513 YGGNVPPPSGGYGGNVPPPSGGAG 584
YGG+ P GGYGG GG G
Sbjct: 327 YGGSYGEPGGGYGGPSGSYGGGYG 350
>At2g30600.2 68415.m03729 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
(GI:1841872) [Dictyostelium discoideum]
Length = 809
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = +1
Query: 289 EYRGFWVRWDSGIISAGREGEAIPF----ISWSDPEP-FPVYYVGVCTGW 423
E++ +W+ G+IS G+ PF W DP+P V YVG+ + W
Sbjct: 101 EFQSYWISIYDGLISIGK--GRYPFQNLVFKWQDPKPNCNVQYVGL-SSW 147
>At2g30600.1 68415.m03728 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
(GI:1841872) [Dictyostelium discoideum]
Length = 809
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = +1
Query: 289 EYRGFWVRWDSGIISAGREGEAIPF----ISWSDPEP-FPVYYVGVCTGW 423
E++ +W+ G+IS G+ PF W DP+P V YVG+ + W
Sbjct: 101 EFQSYWISIYDGLISIGK--GRYPFQNLVFKWQDPKPNCNVQYVGL-SSW 147
>At1g74380.1 68414.m08617 galactosyl transferase GMA12/MNN10 family
protein very low similarity to
alpha-1,2-galactosyltransferase, Schizosaccharomyces
pombe [SP|Q09174]
Length = 457
Score = 28.3 bits (60), Expect = 5.5
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +1
Query: 517 EETYPLRLEATEETYPLRLEEPVYGLMFQEVKYLLAPLWEDRTAQEKPLYVARAVHEGAT 696
EET + E ++ P L+EP G M Y+L P D +Q K +++ + +T
Sbjct: 87 EETNRILAEIRSDSDPTDLDEPQEGDMNPNATYVLGPKITDWDSQRK-VWLNQNPEFPST 145
Query: 697 IPGK 708
+ GK
Sbjct: 146 VNGK 149
>At1g30370.1 68414.m03713 lipase class 3 family protein similar to
DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
GI:16215706; contains Pfam profile: PF01764: Lipase
Length = 529
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 509 RLRRKRTPSVWRLRRKRTPSVWRS 580
+LRR+RT VWRL++K W+S
Sbjct: 12 KLRRRRTKRVWRLKQK-LKLAWKS 34
>At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 162
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/20 (60%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Frame = +3
Query: 528 PPPS-GGYGGNVPPPSGGAG 584
PPPS G G PPP GG G
Sbjct: 83 PPPSQSGGGSKYPPPYGGGG 102
>At5g13210.1 68418.m01516 expressed protein
Length = 673
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +2
Query: 152 TTGPQESDPMYEVMIGGWGNAKSVIRKNRTKPDKVKLKAPEFLTEGNIVVFGFVGIAELS 331
T+GP SDP + M+ + N+ V N + K+ +L+ GN + F + +
Sbjct: 25 TSGP--SDPFMDAMVSNFNNSARVNNVNSPPMGYTENKSATYLSSGNPCLDFFFHVVPST 82
Query: 332 P 334
P
Sbjct: 83 P 83
>At3g57800.2 68416.m06443 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain; supported by full-length cDNA
gi:20127059
Length = 379
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 510 GYGGNVPPPSGGYGGNVPPPS 572
G GG +PPP +GG + PS
Sbjct: 78 GIGGEIPPPLHSFGGTLAFPS 98
>At3g57800.1 68416.m06442 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain; supported by full-length cDNA
gi:20127059
Length = 426
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 510 GYGGNVPPPSGGYGGNVPPPS 572
G GG +PPP +GG + PS
Sbjct: 78 GIGGEIPPPLHSFGGTLAFPS 98
>At3g52460.1 68416.m05769 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 300
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -3
Query: 392 GKGSGSDQDMNGIASPSRPAEIIPLSQRTQKPRYSPPLRIPGLSISP 252
G G S++D+N P P + P +TQ+ Y P + PG P
Sbjct: 16 GPGQNSERDIN--QPPPPPPQSQPPPPQTQQQTYPPVMGYPGYHQPP 60
>At2g05540.1 68415.m00586 glycine-rich protein
Length = 135
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/25 (60%), Positives = 15/25 (60%)
Frame = +3
Query: 510 GYGGNVPPPSGGYGGNVPPPSGGAG 584
GYGG P GGYGGN P GG G
Sbjct: 54 GYGGF---PGGGYGGN---PGGGYG 72
>At5g54650.2 68418.m06805 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +3
Query: 495 PWLP*GYGGNVPPPSGGYGGNVPPPSGGAG 584
P P G GG PPP G G PPP G
Sbjct: 391 PAPPPGSGGPKPPPPPGPKGPRPPPPMSLG 420
>At5g54650.1 68418.m06804 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +3
Query: 495 PWLP*GYGGNVPPPSGGYGGNVPPPSGGAG 584
P P G GG PPP G G PPP G
Sbjct: 391 PAPPPGSGGPKPPPPPGPKGPRPPPPMSLG 420
>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
to proline-rich protein [Arabidopsis thaliana]
gi|6782442|gb|AAF28388; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 448
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 338 PAEIIPLSQRTQKPRYSPPLRIP 270
P E+ P ++ P+YSPP+ +P
Sbjct: 171 PLELPPFLKKPCPPKYSPPVEVP 193
>At4g21620.1 68417.m03134 glycine-rich protein
Length = 131
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Frame = +3
Query: 510 GYGGNVPPPS--GGYGGNVPPPSGGAG 584
G+G P GGYGG PSGG G
Sbjct: 45 GFGNGFPGTGVGGGYGGGFGGPSGGFG 71
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,384,019
Number of Sequences: 28952
Number of extensions: 387653
Number of successful extensions: 1555
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1513
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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