Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0170.Seq
         (676 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6CNF1 Cluster: Kluyveromyces lactis strain NRRL Y-1140...    35   2.1  
UniRef50_Q7MK31 Cluster: Putative uncharacterized protein VV1979...    34   2.7  
UniRef50_A7TZ74 Cluster: Coiled-coil-containing protein; n=1; Le...    34   2.7  
UniRef50_Q5A1Y5 Cluster: Putative uncharacterized protein SRP40;...    34   3.6  
UniRef50_Q6LB70 Cluster: Putative uncharacterized protein; n=1; ...    33   4.8  
UniRef50_Q8XKY4 Cluster: Probable enterotoxin; n=3; Clostridium ...    33   6.3  
UniRef50_Q7PDR9 Cluster: ERYTHROCYTE MEMBRANE PROTEIN PFEMP3; n=...    33   6.3  
UniRef50_O14164 Cluster: Probable eukaryotic translation initiat...    33   6.3  
UniRef50_Q0SUJ7 Cluster: Lipoprotein, putative; n=2; Clostridium...    33   8.4  

>UniRef50_Q6CNF1 Cluster: Kluyveromyces lactis strain NRRL Y-1140
           chromosome E of strain NRRL Y- 1140 of Kluyveromyces
           lactis; n=2; Saccharomycetales|Rep: Kluyveromyces lactis
           strain NRRL Y-1140 chromosome E of strain NRRL Y- 1140
           of Kluyveromyces lactis - Kluyveromyces lactis (Yeast)
           (Candida sphaerica)
          Length = 368

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +1

Query: 7   VKIKAKEEKDVEXXXXXXXXXXXQPDSKSDTD-AKETGGDLTSASDTKIDSNSLNESESK 183
           +KIK K+EK                DS+S +D + ++     S+SD+  DSNS + S S 
Sbjct: 134 IKIKIKDEKSEPVAVEVKVSKSSNSDSESSSDSSSDSDSSSDSSSDSDSDSNSSSSSSSD 193

Query: 184 SFHFQEPKSLSD 219
           S       S SD
Sbjct: 194 SDSDSSSSSSSD 205



 Score = 33.1 bits (72), Expect = 6.3
 Identities = 21/71 (29%), Positives = 33/71 (46%)
 Frame = +1

Query: 7   VKIKAKEEKDVEXXXXXXXXXXXQPDSKSDTDAKETGGDLTSASDTKIDSNSLNESESKS 186
           VK+      D E             DS SD+D+ ++    +S+SD+  DS+S + S+S S
Sbjct: 150 VKVSKSSNSDSESSSDSSSDSDSSSDSSSDSDS-DSNSSSSSSSDSDSDSSSSSSSDSSS 208

Query: 187 FHFQEPKSLSD 219
               +  S SD
Sbjct: 209 DSSSDSDSDSD 219


>UniRef50_Q7MK31 Cluster: Putative uncharacterized protein VV1979;
           n=1; Vibrio vulnificus YJ016|Rep: Putative
           uncharacterized protein VV1979 - Vibrio vulnificus
           (strain YJ016)
          Length = 493

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 18/36 (50%), Positives = 22/36 (61%)
 Frame = +1

Query: 79  PDSKSDTDAKETGGDLTSASDTKIDSNSLNESESKS 186
           PD KSDTD K    D  S SD K DS+  ++S+ KS
Sbjct: 149 PDDKSDTDDKSDSDD-KSDSDDKSDSDDKSDSDDKS 183


>UniRef50_A7TZ74 Cluster: Coiled-coil-containing protein; n=1;
           Lepeophtheirus salmonis|Rep: Coiled-coil-containing
           protein - Lepeophtheirus salmonis (salmon louse)
          Length = 377

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 17/33 (51%), Positives = 24/33 (72%)
 Frame = +1

Query: 88  KSDTDAKETGGDLTSASDTKIDSNSLNESESKS 186
           KSD D K++GGD  S+S T+ +S+S  E+ES S
Sbjct: 191 KSDNDNKKSGGDGDSSSKTENESSSKIENESSS 223


>UniRef50_Q5A1Y5 Cluster: Putative uncharacterized protein SRP40;
           n=2; Candida albicans|Rep: Putative uncharacterized
           protein SRP40 - Candida albicans (Yeast)
          Length = 428

 Score = 33.9 bits (74), Expect = 3.6
 Identities = 20/66 (30%), Positives = 33/66 (50%)
 Frame = +1

Query: 22  KEEKDVEXXXXXXXXXXXQPDSKSDTDAKETGGDLTSASDTKIDSNSLNESESKSFHFQE 201
           +E+K+ +             + K + D K+T  D +S+SD+K DS+S + S S S    +
Sbjct: 189 EEDKEDKEAEKDNKDSEDSENEKVEEDNKDTSSDSSSSSDSKSDSDSDSSSSSDSSSDSD 248

Query: 202 PKSLSD 219
             S SD
Sbjct: 249 SSSDSD 254


>UniRef50_Q6LB70 Cluster: Putative uncharacterized protein; n=1;
           Oligotropha carboxidovorans|Rep: Putative
           uncharacterized protein - Oligotropha carboxidovorans
           (Pseudomonas carboxydovorans)
          Length = 193

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = +3

Query: 465 SPHFSPVPKPDSQVQTAPMYRQRQ*RTIRGIWALSNQLPPTSRKRVLSIE*IAVVK*STT 644
           SPH      P   + T P+ R R    +R +W+     PP+  K  +SI  IAVV  +  
Sbjct: 104 SPHSPVTQHPSRTMATMPIRRLRL-LLLRSLWSHDRHRPPSIYKAAISISRIAVVSHAAG 162

Query: 645 K**NSAVPPR 674
           +   + + PR
Sbjct: 163 RNAPAIISPR 172


>UniRef50_Q8XKY4 Cluster: Probable enterotoxin; n=3; Clostridium
           perfringens|Rep: Probable enterotoxin - Clostridium
           perfringens
          Length = 955

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 551 WHLGTFKSTPTYKSEASPLNRIDSSSKMKHNKMIEQCSPTTS 676
           W    F S PT  S++SP   ++ +  +  NK +E   P TS
Sbjct: 762 WCSSQFLSNPTVISQSSPSKHVEENKPVYENKTVEVSKPVTS 803


>UniRef50_Q7PDR9 Cluster: ERYTHROCYTE MEMBRANE PROTEIN PFEMP3; n=4;
           Plasmodium (Vinckeia)|Rep: ERYTHROCYTE MEMBRANE PROTEIN
           PFEMP3 - Plasmodium yoelii yoelii
          Length = 981

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +2

Query: 518 DVQTETIKNNSWHLGTFKSTPTYKSEASPLNRIDSSSKMKHNKMIEQCSPTT 673
           ++ T  I N+  H     +TP   S A+  N  ++      NKMIE+ SP T
Sbjct: 477 NISTNNINNSIKHNNNNNNTPGNLSSAANFNLYNNKGSTSINKMIEEDSPNT 528


>UniRef50_O14164 Cluster: Probable eukaryotic translation initiation
           factor 3 subunit 8; n=1; Schizosaccharomyces pombe|Rep:
           Probable eukaryotic translation initiation factor 3
           subunit 8 - Schizosaccharomyces pombe (Fission yeast)
          Length = 918

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 17/52 (32%), Positives = 31/52 (59%)
 Frame = +1

Query: 82  DSKSDTDAKETGGDLTSASDTKIDSNSLNESESKSFHFQEPKSLSDVGLSEK 237
           DS+SD+++ E   +  S  D+++   S +ESES+S   +E +S  +   SE+
Sbjct: 80  DSESDSESSEEEEETESEEDSEVSDESESESESESESEEESESEEESDESER 131


>UniRef50_Q0SUJ7 Cluster: Lipoprotein, putative; n=2; Clostridium
           perfringens|Rep: Lipoprotein, putative - Clostridium
           perfringens (strain SM101 / Type A)
          Length = 258

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = +1

Query: 1   DPVKIKAKEEKDVEXXXXXXXXXXXQPDSKSDTDAKETGG-DLTSASDTKIDSNSLNESE 177
           D  + K  + KD E           + DSK+D+  KET   D ++  ++K  SNS  + E
Sbjct: 61  DKAQAKDADSKDKEATNKDEGEKKEE-DSKNDSSTKETAKVDNSNKKESKGSSNSSKKEE 119

Query: 178 SKSFHFQEPKSLSDVGLSE 234
           SKS   +E KS  +  LS+
Sbjct: 120 SKSASKKE-KSNGESSLSK 137


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 599,837,775
Number of Sequences: 1657284
Number of extensions: 11542115
Number of successful extensions: 34828
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 33028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34776
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52066120554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)