Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0170.Seq
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 33 0.038
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom... 30 0.27
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.4
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 27 1.9
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.5
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 27 2.5
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom... 27 2.5
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 27 3.3
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 4.3
SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces... 25 7.6
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 33.1 bits (72), Expect = 0.038
Identities = 17/52 (32%), Positives = 31/52 (59%)
Frame = +1
Query: 82 DSKSDTDAKETGGDLTSASDTKIDSNSLNESESKSFHFQEPKSLSDVGLSEK 237
DS+SD+++ E + S D+++ S +ESES+S +E +S + SE+
Sbjct: 80 DSESDSESSEEEEETESEEDSEVSDESESESESESESEEESESEEESDESER 131
>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 464
Score = 30.3 bits (65), Expect = 0.27
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 499 LSGFGTGLKWGLPKSDFDSDLGVDEES 419
L GFG +K G KSDFDS + + S
Sbjct: 430 LQGFGVAIKMGATKSDFDSCVAIHPTS 456
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 27.9 bits (59), Expect = 1.4
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +2
Query: 485 AKTGQSSSNSPDVQTETIKNNSWHLGTFKSTPTYKSEASPLNRIDSSSKMKHNKMIEQCS 664
+ + +SSS+S + ++S + S+ + KS ASP + SSSK + I +
Sbjct: 173 SSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASP-SSSKSSSKFSSSSFITSTT 231
Query: 665 PTTS 676
P +S
Sbjct: 232 PASS 235
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 27.5 bits (58), Expect = 1.9
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 88 KSDTDAKETGGDLTSASDTKIDSNSLNESESKSF-HFQEPKSLSD 219
K+ T + + D S +D K DS SLNESE + F F E S +D
Sbjct: 41 KNTTSSGSSESDSMSQNDKKKDS-SLNESEDEDFAGFGESASEND 84
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 2.5
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +2
Query: 479 SRAKTGQSSSNSPDVQTETIKNNSWHLGTFKSTPTYKSEASPLNRIDSSSKMKHNKMIEQ 658
S + SSS+SP + TI ++S +F ST + S +S + S +
Sbjct: 288 STISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSS 347
Query: 659 CSPTTS 676
SP++S
Sbjct: 348 SSPSSS 353
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 27.1 bits (57), Expect = 2.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 217 RRDFWVLGNGKIYFRFHLENLNQ 149
RRDFW + N FRF ++ L +
Sbjct: 1382 RRDFWEIFNDNSLFRFDIDQLRK 1404
>SPBC2F12.13 |klp5|sot1|kinesin-like protein
Klp5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 883
Score = 27.1 bits (57), Expect = 2.5
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +2
Query: 479 SRAKTGQSSSNSPDVQTETIKN-NSWHLGTFKSTPTYKSEASPLNRID 619
S + +G S+ NSP +QT +KN N ++ STP +K + N+ID
Sbjct: 701 STSDSGASAYNSP-IQTSKLKNMNFFNTMHMPSTPAHKRPENK-NQID 746
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +1
Query: 157 NSLNESESKSFHFQEPKSLSD 219
+SL+ES + S+H + P+SLS+
Sbjct: 2 DSLSESSTSSYHGKRPRSLSE 22
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 26.2 bits (55), Expect = 4.3
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +2
Query: 488 KTGQSSSNSPDVQTETIKNNSWHLGTFKSTPTYKSEASPLNRIDSSSKMKHNKMIEQ--C 661
K S+S SPD ++ + SW S + ++ ++ + S+++ N +I Q
Sbjct: 301 KKNSSTSLSPDPTSDNFEWGSWVSSQDTSKNSSNLASASVDDVSEESQVEPNTLIFQNFS 360
Query: 662 SPTTS 676
SP+TS
Sbjct: 361 SPSTS 365
>SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 446
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -1
Query: 496 SGFGTGLKWGLPKSDFDSDLGVDE 425
SG+ GL P SDFDSD VDE
Sbjct: 380 SGYVAGLSSRDPDSDFDSD-NVDE 402
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,670
Number of Sequences: 5004
Number of extensions: 49717
Number of successful extensions: 188
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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