Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0170.Seq
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0979 + 9847008-9847093,9848148-9848682                           29   4.5  
01_01_0046 - 331758-332627                                             29   4.5  
12_02_0266 - 16582912-16584918,16585041-16585229                       28   5.9  
12_02_0350 + 17826907-17827041,17828018-17828070,17828305-178284...    28   7.8  
04_03_0621 - 18102243-18104249                                         28   7.8  

>08_01_0979 + 9847008-9847093,9848148-9848682
          Length = 206

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +2

Query: 467 SPL*SRAKTGQSSSNSPDVQTETIKNNSWHLGTFKSTPTYKSEASPLNRIDSSSKMKHN- 643
           SPL  RA  G SSS   D     +++  W     +    Y++E S    I  +   K+N 
Sbjct: 8   SPLDLRAAMGASSSRKADTARRDMESREWMYHWPRFLSPYRNEVSKFIGIAKAHTEKNNM 67

Query: 644 -KMIEQCS 664
            K+I  C+
Sbjct: 68  RKIICPCA 75


>01_01_0046 - 331758-332627
          Length = 289

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 112 TGGDLTSASDTKIDSNSLNESESKSFHFQEPKSLSDVGLSEK 237
           +GGDL      K+ SNS ++S++KS   Q+   ++D    EK
Sbjct: 212 SGGDLGVHLKLKLSSNSKSKSKTKSKEKQQHNVVADTSNKEK 253


>12_02_0266 - 16582912-16584918,16585041-16585229
          Length = 731

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = -3

Query: 308 ITRLTIYGFTINRRFRNESRD---EESFSLNPTSERLLGSWKWKDLLSLSFREFESILVS 138
           +T L   G   NRR  N+  D      F+   TS R LG     +L  L FR     +V 
Sbjct: 497 LTNLRTLGVIYNRRRGNDEDDLIDMVKFAALATSLRELGGC---NLRCLDFR-----VVL 548

Query: 137 EADVRSPPVSF 105
           E ++R PP+SF
Sbjct: 549 EGNIRQPPISF 559


>12_02_0350 +
           17826907-17827041,17828018-17828070,17828305-17828414,
           17828629-17828796,17828898-17829155,17829295-17829395
          Length = 274

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 248 DEESFSLNPTSERLLGSWKWKDLLS 174
           +EE+ SL P   R++ SW WK  ++
Sbjct: 37  EEETSSLLPAFSRVIRSWAWKKFMT 61


>04_03_0621 - 18102243-18104249
          Length = 668

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/69 (24%), Positives = 28/69 (40%)
 Frame = +2

Query: 470 PL*SRAKTGQSSSNSPDVQTETIKNNSWHLGTFKSTPTYKSEASPLNRIDSSSKMKHNKM 649
           PL  R     S+  +  V      N   H  + ++T  Y++ +  L++     +  H   
Sbjct: 429 PLVHRVSPSASAHQNSLVNPAIGTNEVQHRRSTRATKIYETASQHLSKKRGFHEAAHEST 488

Query: 650 IEQCSPTTS 676
              CSPTTS
Sbjct: 489 KRHCSPTTS 497


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,127,179
Number of Sequences: 37544
Number of extensions: 320486
Number of successful extensions: 834
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)