Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0170.Seq
(676 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34364| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_35539| Best HMM Match : RVT_1 (HMM E-Value=1.7e-07) 30 2.0
SB_35782| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0) 29 4.5
SB_41087| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_39685| Best HMM Match : ANTH (HMM E-Value=1.5e-11) 28 7.9
SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_51729| Best HMM Match : HABP4_PAI-RBP1 (HMM E-Value=1.2) 28 7.9
SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17) 28 7.9
SB_39817| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_34364| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 31.5 bits (68), Expect = 0.64
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +1
Query: 7 VKIKAKEEKDVEXXXXXXXXXXXQPDSKSDTDAKETGGDLTSASDTKIDSNSLNESESKS 186
V + +EKDVE S SDT+ +E + SDT + E +S
Sbjct: 91 VPVPPLKEKDVEEEEERGSDGGDARSSGSDTEGEEAEKVVIGESDTSEEEEEEEEESMES 150
Query: 187 FH-FQEPKSLSDV 222
++ EP++ +DV
Sbjct: 151 YNDLDEPQATNDV 163
>SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1325
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/65 (33%), Positives = 31/65 (47%)
Frame = +2
Query: 479 SRAKTGQSSSNSPDVQTETIKNNSWHLGTFKSTPTYKSEASPLNRIDSSSKMKHNKMIEQ 658
S+ K SS+ S TE+ S + K+TP+ KS S L S S + +K Q
Sbjct: 117 SKMKNEGSSTISSKSTTESSSAGST-IPRVKTTPSSKSHLSQLKSKRSRSPSRTSKRSYQ 175
Query: 659 CSPTT 673
CSP +
Sbjct: 176 CSPVS 180
>SB_35539| Best HMM Match : RVT_1 (HMM E-Value=1.7e-07)
Length = 1105
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -1
Query: 448 DSDLGVDEESGLDCDIGLKSFGVTSLVNLLSSRTEVA 338
D DLG+ +SGL D GL GV+S ++S +V+
Sbjct: 280 DRDLGIMPDSGLYQDSGLSQRGVSSRKTMISKAWQVS 316
>SB_35782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +1
Query: 85 SKSDTDAKETGGDLTSASDTKIDSNSLNESESKSF----HFQEPKSLSDV 222
S SDTD +E + SDT + NS +E E +S EP++ DV
Sbjct: 65 SGSDTDGEEAEKVVAVESDTSDEENSADEEEEESMESYNELDEPQATYDV 114
>SB_4658| Best HMM Match : HTH_psq (HMM E-Value=0)
Length = 1595
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 97 TDAKETGGDLTSASDTKIDSNSLNESESKSFHFQEPKSLS 216
TD +E+ LT KID +S +ES K H Q P ++S
Sbjct: 51 TDDRESS--LTQYDSPKIDEDSKSESPPKRDHQQSPSTMS 88
>SB_41087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 491
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 424 PRPRRGQNRNQILVVPTLVPCQNRTV 501
PRP +G N IL PT +P RT+
Sbjct: 233 PRPSQGHNPAGILRCPTAIPGHKRTI 258
>SB_39685| Best HMM Match : ANTH (HMM E-Value=1.5e-11)
Length = 523
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 100 DAKETGGDLTSASDTKIDSNSLNESESKSFHFQEPKSLSDVGLS 231
DA E+G LT DT D N+ + E + H Q KS + S
Sbjct: 295 DAFESGSFLTKFDDTDTDVNTKHLLEEEEKHLQAFKSAKESNTS 338
>SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 482
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = -3
Query: 605 EDSLPTCRWELI*KCPNATNCSL-LSLSVHRGCLNLTVRFWHGTKVGTTK 459
ED P C+ EL+ KC T C SVH C+ + T TK
Sbjct: 76 EDVCPICQDELLDKCEPLTYCKYGCGNSVHIKCMKVWAEHQRSTGEKITK 125
>SB_51729| Best HMM Match : HABP4_PAI-RBP1 (HMM E-Value=1.2)
Length = 519
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = +1
Query: 85 SKSDTDAKETGGDLTSASDTKIDSNSLNESESKSFH----FQEPKSLSDV 222
S SDTD +E G + SDT + E E +S EP++ +DV
Sbjct: 76 SGSDTDGEEAKGVVVVESDTSDEEEEEEEEEEESMESYNDLDEPQANNDV 125
>SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)
Length = 1775
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 469 GLPKSDFDSDLGVDEESGLDCD 404
GLP+ D D GVDE +G D D
Sbjct: 1558 GLPRRSRDDDTGVDENAGDDDD 1579
>SB_39817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 503
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 100 DAKETGGDLTSASDTKIDSNSLNESESKSFHFQEPKSLSDVGLS 231
DA E+G LT DT D N+ + E + H Q KS + S
Sbjct: 276 DAFESGSFLTKFDDTDTDVNTKHLLEEEEKHLQAFKSAKESNTS 319
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,480,910
Number of Sequences: 59808
Number of extensions: 364856
Number of successful extensions: 1199
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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