Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0170.Seq
(676 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC150182-1|AAI50183.1| 1192|Homo sapiens reticulon 4 protein. 32 2.1
AY123250-1|AAM64254.1| 986|Homo sapiens RTN4 isoform G protein. 32 2.1
AY123249-1|AAM64253.1| 986|Homo sapiens RTN4 isoform F protein. 32 2.1
AY123248-1|AAM64252.1| 986|Homo sapiens RTN4 isoform E protein. 32 2.1
AY123247-1|AAM64251.1| 986|Homo sapiens RTN4 isoform D protein. 32 2.1
AY123246-1|AAM64250.1| 986|Homo sapiens RTN4 isoform Ab protein. 32 2.1
AY123245-1|AAM64249.1| 986|Homo sapiens RTN4 isoform Aa protein. 32 2.1
AY102285-4|AAM64244.1| 986|Homo sapiens RNT4 protein. 32 2.1
AY102285-1|AAM64243.1| 1192|Homo sapiens RTN4 protein. 32 2.1
AY102279-1|AAM64248.1| 1192|Homo sapiens RTN4 isoform A protein. 32 2.1
AJ251383-1|CAB99248.1| 1192|Homo sapiens Nogo-A protein protein. 32 2.1
AF333336-1|AAK20831.1| 986|Homo sapiens testis specific reticul... 32 2.1
AF320999-1|AAG40878.1| 960|Homo sapiens Nogo-A protein short fo... 32 2.1
AF148537-1|AAG12176.1| 1192|Homo sapiens reticulon 4a protein. 32 2.1
AC092461-1|AAX93116.1| 818|Homo sapiens unknown protein. 32 2.1
AB073359-1|BAE45717.1| 294|Homo sapiens NOGO-A protein. 32 2.1
AB040462-1|BAB18927.1| 1192|Homo sapiens RTN-xL protein. 32 2.1
AB020693-1|BAA74909.2| 1233|Homo sapiens KIAA0886 protein protein. 32 2.1
BC125020-1|AAI25021.1| 853|Homo sapiens TRPS1 protein protein. 31 4.9
AF264784-1|AAG21134.1| 1281|Homo sapiens zinc finger protein GC7... 31 4.9
AF183810-1|AAF23614.1| 1281|Homo sapiens zinc finger transcripti... 31 4.9
BX537976-1|CAD97940.1| 693|Homo sapiens hypothetical protein pr... 30 8.6
BC107493-1|AAI07494.1| 699|Homo sapiens extracellular matrix pr... 30 8.6
BC105958-1|AAI05959.1| 677|Homo sapiens ECM2 protein protein. 30 8.6
AL157827-4|CAI12589.1| 699|Homo sapiens extracellular matrix pr... 30 8.6
AL137848-1|CAI16693.1| 699|Homo sapiens extracellular matrix pr... 30 8.6
AK055778-1|BAB71011.1| 1113|Homo sapiens protein ( Homo sapiens ... 30 8.6
AF391558-1|AAO13803.1| 1192|Homo sapiens myosin IIIB variant MYO... 30 8.6
AF391557-1|AAO13802.1| 1275|Homo sapiens myosin IIIB variant MYO... 30 8.6
AF391556-1|AAO13801.1| 1314|Homo sapiens myosin IIIB variant MYO... 30 8.6
AF391555-1|AAO13800.1| 1341|Homo sapiens myosin IIIB variant MYO... 30 8.6
AF391554-1|AAO13799.1| 1251|Homo sapiens myosin IIIB variant MYO... 30 8.6
AF369908-1|AAL57233.1| 1278|Homo sapiens myosin IIIB protein. 30 8.6
AC012594-1|AAY24324.1| 851|Homo sapiens unknown protein. 30 8.6
AB011792-1|BAA33958.1| 699|Homo sapiens extracellular matrix pr... 30 8.6
>BC150182-1|AAI50183.1| 1192|Homo sapiens reticulon 4 protein.
Length = 1192
Score = 31.9 bits (69), Expect = 2.1
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 82 DSKSDTDAKETGGDLTSASDTKIDSNSLNESESKSFHFQEPKSLSD 219
DSK D+D GG + S ++K+D +S ++ H ++ +S +D
Sbjct: 398 DSKEDSDMLAAGGKIESNLESKVDKKCFADSLEQTNHEKDSESSND 443
>AY123250-1|AAM64254.1| 986|Homo sapiens RTN4 isoform G protein.
Length = 986
Score = 31.9 bits (69), Expect = 2.1
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 82 DSKSDTDAKETGGDLTSASDTKIDSNSLNESESKSFHFQEPKSLSD 219
DSK D+D GG + S ++K+D +S ++ H ++ +S +D
Sbjct: 192 DSKEDSDMLAAGGKIESNLESKVDKKCFADSLEQTNHEKDSESSND 237
>AY123249-1|AAM64253.1| 986|Homo sapiens RTN4 isoform F protein.
Length = 986
Score = 31.9 bits (69), Expect = 2.1
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 82 DSKSDTDAKETGGDLTSASDTKIDSNSLNESESKSFHFQEPKSLSD 219
DSK D+D GG + S ++K+D +S ++ H ++ +S +D
Sbjct: 192 DSKEDSDMLAAGGKIESNLESKVDKKCFADSLEQTNHEKDSESSND 237
>AY123248-1|AAM64252.1| 986|Homo sapiens RTN4 isoform E protein.
Length = 986
Score = 31.9 bits (69), Expect = 2.1
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 82 DSKSDTDAKETGGDLTSASDTKIDSNSLNESESKSFHFQEPKSLSD 219
DSK D+D GG + S ++K+D +S ++ H ++ +S +D
Sbjct: 192 DSKEDSDMLAAGGKIESNLESKVDKKCFADSLEQTNHEKDSESSND 237
>AY123247-1|AAM64251.1| 986|Homo sapiens RTN4 isoform D protein.
Length = 986
Score = 31.9 bits (69), Expect = 2.1
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 82 DSKSDTDAKETGGDLTSASDTKIDSNSLNESESKSFHFQEPKSLSD 219
DSK D+D GG + S ++K+D +S ++ H ++ +S +D
Sbjct: 192 DSKEDSDMLAAGGKIESNLESKVDKKCFADSLEQTNHEKDSESSND 237
>AY123246-1|AAM64250.1| 986|Homo sapiens RTN4 isoform Ab protein.
Length = 986
Score = 31.9 bits (69), Expect = 2.1
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 82 DSKSDTDAKETGGDLTSASDTKIDSNSLNESESKSFHFQEPKSLSD 219
DSK D+D GG + S ++K+D +S ++ H ++ +S +D
Sbjct: 192 DSKEDSDMLAAGGKIESNLESKVDKKCFADSLEQTNHEKDSESSND 237
>AY123245-1|AAM64249.1| 986|Homo sapiens RTN4 isoform Aa protein.
Length = 986
Score = 31.9 bits (69), Expect = 2.1
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 82 DSKSDTDAKETGGDLTSASDTKIDSNSLNESESKSFHFQEPKSLSD 219
DSK D+D GG + S ++K+D +S ++ H ++ +S +D
Sbjct: 192 DSKEDSDMLAAGGKIESNLESKVDKKCFADSLEQTNHEKDSESSND 237
>AY102285-4|AAM64244.1| 986|Homo sapiens RNT4 protein.
Length = 986
Score = 31.9 bits (69), Expect = 2.1
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 82 DSKSDTDAKETGGDLTSASDTKIDSNSLNESESKSFHFQEPKSLSD 219
DSK D+D GG + S ++K+D +S ++ H ++ +S +D
Sbjct: 192 DSKEDSDMLAAGGKIESNLESKVDKKCFADSLEQTNHEKDSESSND 237
>AY102285-1|AAM64243.1| 1192|Homo sapiens RTN4 protein.
Length = 1192
Score = 31.9 bits (69), Expect = 2.1
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 82 DSKSDTDAKETGGDLTSASDTKIDSNSLNESESKSFHFQEPKSLSD 219
DSK D+D GG + S ++K+D +S ++ H ++ +S +D
Sbjct: 398 DSKEDSDMLAAGGKIESNLESKVDKKCFADSLEQTNHEKDSESSND 443
>AY102279-1|AAM64248.1| 1192|Homo sapiens RTN4 isoform A protein.
Length = 1192
Score = 31.9 bits (69), Expect = 2.1
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 82 DSKSDTDAKETGGDLTSASDTKIDSNSLNESESKSFHFQEPKSLSD 219
DSK D+D GG + S ++K+D +S ++ H ++ +S +D
Sbjct: 398 DSKEDSDMLAAGGKIESNLESKVDKKCFADSLEQTNHEKDSESSND 443
>AJ251383-1|CAB99248.1| 1192|Homo sapiens Nogo-A protein protein.
Length = 1192
Score = 31.9 bits (69), Expect = 2.1
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 82 DSKSDTDAKETGGDLTSASDTKIDSNSLNESESKSFHFQEPKSLSD 219
DSK D+D GG + S ++K+D +S ++ H ++ +S +D
Sbjct: 398 DSKEDSDMLAAGGKIESNLESKVDKKCFADSLEQTNHEKDSESSND 443
>AF333336-1|AAK20831.1| 986|Homo sapiens testis specific reticulon
5 protein protein.
Length = 986
Score = 31.9 bits (69), Expect = 2.1
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 82 DSKSDTDAKETGGDLTSASDTKIDSNSLNESESKSFHFQEPKSLSD 219
DSK D+D GG + S ++K+D +S ++ H ++ +S +D
Sbjct: 192 DSKEDSDMLAAGGKIESNLESKVDKKCFADSLEQTNHEKDSESSND 237
>AF320999-1|AAG40878.1| 960|Homo sapiens Nogo-A protein short form
protein.
Length = 960
Score = 31.9 bits (69), Expect = 2.1
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 82 DSKSDTDAKETGGDLTSASDTKIDSNSLNESESKSFHFQEPKSLSD 219
DSK D+D GG + S ++K+D +S ++ H ++ +S +D
Sbjct: 166 DSKEDSDMLAAGGKIESNLESKVDKKCFADSLEQTNHEKDSESSND 211
>AF148537-1|AAG12176.1| 1192|Homo sapiens reticulon 4a protein.
Length = 1192
Score = 31.9 bits (69), Expect = 2.1
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 82 DSKSDTDAKETGGDLTSASDTKIDSNSLNESESKSFHFQEPKSLSD 219
DSK D+D GG + S ++K+D +S ++ H ++ +S +D
Sbjct: 398 DSKEDSDMLAAGGKIESNLESKVDKKCFADSLEQTNHEKDSESSND 443
>AC092461-1|AAX93116.1| 818|Homo sapiens unknown protein.
Length = 818
Score = 31.9 bits (69), Expect = 2.1
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 82 DSKSDTDAKETGGDLTSASDTKIDSNSLNESESKSFHFQEPKSLSD 219
DSK D+D GG + S ++K+D +S ++ H ++ +S +D
Sbjct: 212 DSKEDSDMLAAGGKIESNLESKVDKKCFADSLEQTNHEKDSESSND 257
>AB073359-1|BAE45717.1| 294|Homo sapiens NOGO-A protein.
Length = 294
Score = 31.9 bits (69), Expect = 2.1
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 82 DSKSDTDAKETGGDLTSASDTKIDSNSLNESESKSFHFQEPKSLSD 219
DSK D+D GG + S ++K+D +S ++ H ++ +S +D
Sbjct: 197 DSKEDSDMLAAGGKIESNLESKVDKKCFADSLEQTNHEKDSESSND 242
>AB040462-1|BAB18927.1| 1192|Homo sapiens RTN-xL protein.
Length = 1192
Score = 31.9 bits (69), Expect = 2.1
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 82 DSKSDTDAKETGGDLTSASDTKIDSNSLNESESKSFHFQEPKSLSD 219
DSK D+D GG + S ++K+D +S ++ H ++ +S +D
Sbjct: 398 DSKEDSDMLAAGGKIESNLESKVDKKCFADSLEQTNHEKDSESSND 443
>AB020693-1|BAA74909.2| 1233|Homo sapiens KIAA0886 protein protein.
Length = 1233
Score = 31.9 bits (69), Expect = 2.1
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 82 DSKSDTDAKETGGDLTSASDTKIDSNSLNESESKSFHFQEPKSLSD 219
DSK D+D GG + S ++K+D +S ++ H ++ +S +D
Sbjct: 439 DSKEDSDMLAAGGKIESNLESKVDKKCFADSLEQTNHEKDSESSND 484
>BC125020-1|AAI25021.1| 853|Homo sapiens TRPS1 protein protein.
Length = 853
Score = 30.7 bits (66), Expect = 4.9
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 82 DSKSDTDAKETGGDLTSASDTKIDSNSLNESESKSFHFQEPKSLS 216
+SK KE D S + + D+ LN E S H Q+P S S
Sbjct: 27 ESKVSGKNKEFSADQMSENTDQSDAAELNHKEEHSLHVQDPSSSS 71
>AF264784-1|AAG21134.1| 1281|Homo sapiens zinc finger protein GC79
protein.
Length = 1281
Score = 30.7 bits (66), Expect = 4.9
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 82 DSKSDTDAKETGGDLTSASDTKIDSNSLNESESKSFHFQEPKSLS 216
+SK KE D S + + D+ LN E S H Q+P S S
Sbjct: 27 ESKVSGKNKEFSADQMSENTDQSDAAELNHKEEHSLHVQDPSSSS 71
>AF183810-1|AAF23614.1| 1281|Homo sapiens zinc finger transcription
factor TRPS1 protein.
Length = 1281
Score = 30.7 bits (66), Expect = 4.9
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 82 DSKSDTDAKETGGDLTSASDTKIDSNSLNESESKSFHFQEPKSLS 216
+SK KE D S + + D+ LN E S H Q+P S S
Sbjct: 27 ESKVSGKNKEFSADQMSENTDQSDAAELNHKEEHSLHVQDPSSSS 71
>BX537976-1|CAD97940.1| 693|Homo sapiens hypothetical protein
protein.
Length = 693
Score = 29.9 bits (64), Expect = 8.6
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +3
Query: 459 FGSPHFSPVPKPDSQVQTAPMYRQRQ*RTIRGIWALSNQLPPTSRKRVLSIE 614
F P SP+P P P RTI I A+ Q+PP + ++ S+E
Sbjct: 326 FRMPSRSPLPAPPRGTLRLPSGCSLSYRTISCINAMLTQIPPLTAPQITSLE 377
>BC107493-1|AAI07494.1| 699|Homo sapiens extracellular matrix
protein 2, female organ and adipocyte specific protein.
Length = 699
Score = 29.9 bits (64), Expect = 8.6
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +3
Query: 459 FGSPHFSPVPKPDSQVQTAPMYRQRQ*RTIRGIWALSNQLPPTSRKRVLSIE 614
F P SP+P P P RTI I A+ Q+PP + ++ S+E
Sbjct: 298 FRMPSRSPLPAPPRGTLRLPSGCSLSYRTISCINAMLTQIPPLTAPQITSLE 349
>BC105958-1|AAI05959.1| 677|Homo sapiens ECM2 protein protein.
Length = 677
Score = 29.9 bits (64), Expect = 8.6
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +3
Query: 459 FGSPHFSPVPKPDSQVQTAPMYRQRQ*RTIRGIWALSNQLPPTSRKRVLSIE 614
F P SP+P P P RTI I A+ Q+PP + ++ S+E
Sbjct: 276 FRMPSRSPLPAPPRGTLRLPSGCSLSYRTISCINAMLTQIPPLTAPQITSLE 327
>AL157827-4|CAI12589.1| 699|Homo sapiens extracellular matrix
protein 2, female organ and adipocyte specific protein.
Length = 699
Score = 29.9 bits (64), Expect = 8.6
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +3
Query: 459 FGSPHFSPVPKPDSQVQTAPMYRQRQ*RTIRGIWALSNQLPPTSRKRVLSIE 614
F P SP+P P P RTI I A+ Q+PP + ++ S+E
Sbjct: 298 FRMPSRSPLPAPPRGTLRLPSGCSLSYRTISCINAMLTQIPPLTAPQITSLE 349
>AL137848-1|CAI16693.1| 699|Homo sapiens extracellular matrix
protein 2, female organ and adipocyte specific protein.
Length = 699
Score = 29.9 bits (64), Expect = 8.6
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +3
Query: 459 FGSPHFSPVPKPDSQVQTAPMYRQRQ*RTIRGIWALSNQLPPTSRKRVLSIE 614
F P SP+P P P RTI I A+ Q+PP + ++ S+E
Sbjct: 298 FRMPSRSPLPAPPRGTLRLPSGCSLSYRTISCINAMLTQIPPLTAPQITSLE 349
>AK055778-1|BAB71011.1| 1113|Homo sapiens protein ( Homo sapiens cDNA
FLJ31216 fis, clone KIDNE2004084, moderately similar to
Morone saxatilis myosin heavy chain FM3A (FM3A) mRNA. ).
Length = 1113
Score = 29.9 bits (64), Expect = 8.6
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -1
Query: 229 LTRRRRDFWVLGNGKIYFR-FHLENLN 152
L + R D WVLG K++ + +H+E LN
Sbjct: 1037 LEKSRLDHWVLGKTKVFLKYYHVEQLN 1063
>AF391558-1|AAO13803.1| 1192|Homo sapiens myosin IIIB variant MYO3B.5
protein.
Length = 1192
Score = 29.9 bits (64), Expect = 8.6
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -1
Query: 229 LTRRRRDFWVLGNGKIYFR-FHLENLN 152
L + R D WVLG K++ + +H+E LN
Sbjct: 1028 LEKSRLDHWVLGKTKVFLKYYHVEQLN 1054
>AF391557-1|AAO13802.1| 1275|Homo sapiens myosin IIIB variant MYO3B.4
protein.
Length = 1275
Score = 29.9 bits (64), Expect = 8.6
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -1
Query: 229 LTRRRRDFWVLGNGKIYFR-FHLENLN 152
L + R D WVLG K++ + +H+E LN
Sbjct: 1028 LEKSRLDHWVLGKTKVFLKYYHVEQLN 1054
>AF391556-1|AAO13801.1| 1314|Homo sapiens myosin IIIB variant MYO3B.3
protein.
Length = 1314
Score = 29.9 bits (64), Expect = 8.6
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -1
Query: 229 LTRRRRDFWVLGNGKIYFR-FHLENLN 152
L + R D WVLG K++ + +H+E LN
Sbjct: 1028 LEKSRLDHWVLGKTKVFLKYYHVEQLN 1054
>AF391555-1|AAO13800.1| 1341|Homo sapiens myosin IIIB variant MYO3B.2
protein.
Length = 1341
Score = 29.9 bits (64), Expect = 8.6
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -1
Query: 229 LTRRRRDFWVLGNGKIYFR-FHLENLN 152
L + R D WVLG K++ + +H+E LN
Sbjct: 1028 LEKSRLDHWVLGKTKVFLKYYHVEQLN 1054
>AF391554-1|AAO13799.1| 1251|Homo sapiens myosin IIIB variant MYO3B.1
protein.
Length = 1251
Score = 29.9 bits (64), Expect = 8.6
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -1
Query: 229 LTRRRRDFWVLGNGKIYFR-FHLENLN 152
L + R D WVLG K++ + +H+E LN
Sbjct: 1028 LEKSRLDHWVLGKTKVFLKYYHVEQLN 1054
>AF369908-1|AAL57233.1| 1278|Homo sapiens myosin IIIB protein.
Length = 1278
Score = 29.9 bits (64), Expect = 8.6
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -1
Query: 229 LTRRRRDFWVLGNGKIYFR-FHLENLN 152
L + R D WVLG K++ + +H+E LN
Sbjct: 1028 LEKSRLDHWVLGKTKVFLKYYHVEQLN 1054
>AC012594-1|AAY24324.1| 851|Homo sapiens unknown protein.
Length = 851
Score = 29.9 bits (64), Expect = 8.6
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -1
Query: 229 LTRRRRDFWVLGNGKIYFR-FHLENLN 152
L + R D WVLG K++ + +H+E LN
Sbjct: 756 LEKSRLDHWVLGKTKVFLKYYHVEQLN 782
>AB011792-1|BAA33958.1| 699|Homo sapiens extracellular matrix
protein protein.
Length = 699
Score = 29.9 bits (64), Expect = 8.6
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +3
Query: 459 FGSPHFSPVPKPDSQVQTAPMYRQRQ*RTIRGIWALSNQLPPTSRKRVLSIE 614
F P SP+P P P RTI I A+ Q+PP + ++ S+E
Sbjct: 298 FRMPSRSPLPAPPRGTLRLPSGCSLSYRTISCINAMLTQIPPLTAPQITSLE 349
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,560,839
Number of Sequences: 237096
Number of extensions: 1770678
Number of successful extensions: 3833
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 3685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3831
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7615267504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -