Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0170.Seq
         (676 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058607-1|AAL13836.1|  999|Drosophila melanogaster LD30037p pro...    30   3.3  
AF159852-1|AAD54965.1|  999|Drosophila melanogaster RNA-binding ...    30   3.3  
AF132213-1|AAF61321.1|  999|Drosophila melanogaster smaug protei...    30   3.3  
AE014296-1566|AAN11981.1|  999|Drosophila melanogaster CG5263-PC...    30   3.3  
AE014296-1565|AAF50334.3|  999|Drosophila melanogaster CG5263-PB...    30   3.3  
AE014296-1564|AAF50333.3|  999|Drosophila melanogaster CG5263-PA...    30   3.3  
X80839-1|CAA56811.1| 1477|Drosophila melanogaster tumor-supresso...    29   5.8  
AY051653-1|AAK93077.1| 1477|Drosophila melanogaster LD05287p pro...    29   5.8  
AE014297-4107|AAN14107.1| 1477|Drosophila melanogaster CG5954-PB...    29   5.8  
AE014297-4106|AAF56691.1| 1477|Drosophila melanogaster CG5954-PA...    29   5.8  
AY119242-1|AAM51102.1|  631|Drosophila melanogaster SD20009p pro...    29   7.7  
AE014298-587|AAF45911.1|  631|Drosophila melanogaster CG6428-PA ...    29   7.7  

>AY058607-1|AAL13836.1|  999|Drosophila melanogaster LD30037p protein.
          Length = 999

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +3

Query: 462  GSPHFSPVPKPDSQVQTAPMYRQRQ*RTIRGIWALSNQLPPTSRKRVLS 608
            G+P   P P P S+    P   Q+  +      AL  Q PP S +R L+
Sbjct: 868  GNPQQQPPPPPSSKSHHHPQQMQQMLQQHNHFPALPQQTPPQSHRRSLN 916


>AF159852-1|AAD54965.1|  999|Drosophila melanogaster RNA-binding
            protein Smaug protein.
          Length = 999

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +3

Query: 462  GSPHFSPVPKPDSQVQTAPMYRQRQ*RTIRGIWALSNQLPPTSRKRVLS 608
            G+P   P P P S+    P   Q+  +      AL  Q PP S +R L+
Sbjct: 868  GNPQQQPPPPPSSKSHHHPQQMQQMLQQHNHFPALPQQTPPQSHRRSLN 916


>AF132213-1|AAF61321.1|  999|Drosophila melanogaster smaug protein
            protein.
          Length = 999

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +3

Query: 462  GSPHFSPVPKPDSQVQTAPMYRQRQ*RTIRGIWALSNQLPPTSRKRVLS 608
            G+P   P P P S+    P   Q+  +      AL  Q PP S +R L+
Sbjct: 868  GNPQQQPPPPPSSKSHHHPQQMQQMLQQHNHFPALPQQTPPQSHRRSLN 916


>AE014296-1566|AAN11981.1|  999|Drosophila melanogaster CG5263-PC,
            isoform C protein.
          Length = 999

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +3

Query: 462  GSPHFSPVPKPDSQVQTAPMYRQRQ*RTIRGIWALSNQLPPTSRKRVLS 608
            G+P   P P P S+    P   Q+  +      AL  Q PP S +R L+
Sbjct: 868  GNPQQQPPPPPSSKSHHHPQQMQQMLQQHNHFPALPQQTPPQSHRRSLN 916


>AE014296-1565|AAF50334.3|  999|Drosophila melanogaster CG5263-PB,
            isoform B protein.
          Length = 999

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +3

Query: 462  GSPHFSPVPKPDSQVQTAPMYRQRQ*RTIRGIWALSNQLPPTSRKRVLS 608
            G+P   P P P S+    P   Q+  +      AL  Q PP S +R L+
Sbjct: 868  GNPQQQPPPPPSSKSHHHPQQMQQMLQQHNHFPALPQQTPPQSHRRSLN 916


>AE014296-1564|AAF50333.3|  999|Drosophila melanogaster CG5263-PA,
            isoform A protein.
          Length = 999

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +3

Query: 462  GSPHFSPVPKPDSQVQTAPMYRQRQ*RTIRGIWALSNQLPPTSRKRVLS 608
            G+P   P P P S+    P   Q+  +      AL  Q PP S +R L+
Sbjct: 868  GNPQQQPPPPPSSKSHHHPQQMQQMLQQHNHFPALPQQTPPQSHRRSLN 916


>X80839-1|CAA56811.1| 1477|Drosophila melanogaster tumor-supressor
           protein.
          Length = 1477

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 15/64 (23%), Positives = 28/64 (43%)
 Frame = +2

Query: 485 AKTGQSSSNSPDVQTETIKNNSWHLGTFKSTPTYKSEASPLNRIDSSSKMKHNKMIEQCS 664
           + +   SS+  DV+    K     L         K+E+ PL+R D    ++ ++ + Q  
Sbjct: 542 SSSSSDSSSYSDVEVVPTKKTEKELSLLPGISIIKAESLPLSREDFERSLRCDEQVPQTP 601

Query: 665 PTTS 676
           P +S
Sbjct: 602 PKSS 605


>AY051653-1|AAK93077.1| 1477|Drosophila melanogaster LD05287p
           protein.
          Length = 1477

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 15/64 (23%), Positives = 28/64 (43%)
 Frame = +2

Query: 485 AKTGQSSSNSPDVQTETIKNNSWHLGTFKSTPTYKSEASPLNRIDSSSKMKHNKMIEQCS 664
           + +   SS+  DV+    K     L         K+E+ PL+R D    ++ ++ + Q  
Sbjct: 542 SSSSSDSSSYSDVEVVPTKKTEKELSMLPGISIIKAESLPLSREDFERSLRCDEQVPQTP 601

Query: 665 PTTS 676
           P +S
Sbjct: 602 PKSS 605


>AE014297-4107|AAN14107.1| 1477|Drosophila melanogaster CG5954-PB,
           isoform B protein.
          Length = 1477

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 15/64 (23%), Positives = 28/64 (43%)
 Frame = +2

Query: 485 AKTGQSSSNSPDVQTETIKNNSWHLGTFKSTPTYKSEASPLNRIDSSSKMKHNKMIEQCS 664
           + +   SS+  DV+    K     L         K+E+ PL+R D    ++ ++ + Q  
Sbjct: 542 SSSSSDSSSYSDVEVVPTKKTEKELSMLPGISIIKAESLPLSREDFERSLRCDEQVPQTP 601

Query: 665 PTTS 676
           P +S
Sbjct: 602 PKSS 605


>AE014297-4106|AAF56691.1| 1477|Drosophila melanogaster CG5954-PA,
           isoform A protein.
          Length = 1477

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 15/64 (23%), Positives = 28/64 (43%)
 Frame = +2

Query: 485 AKTGQSSSNSPDVQTETIKNNSWHLGTFKSTPTYKSEASPLNRIDSSSKMKHNKMIEQCS 664
           + +   SS+  DV+    K     L         K+E+ PL+R D    ++ ++ + Q  
Sbjct: 542 SSSSSDSSSYSDVEVVPTKKTEKELSMLPGISIIKAESLPLSREDFERSLRCDEQVPQTP 601

Query: 665 PTTS 676
           P +S
Sbjct: 602 PKSS 605


>AY119242-1|AAM51102.1|  631|Drosophila melanogaster SD20009p
           protein.
          Length = 631

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +1

Query: 82  DSKSDTDAKETGGDLTSASDTKIDSNSLNESESKSFHFQEPKSLSDVG 225
           D K         G+LTS    K++   L ++ ++S H   P+ L  +G
Sbjct: 394 DMKKQMMQSSLRGELTSLKAPKMEDYDLVDAVARSLHLSSPQELDQLG 441


>AE014298-587|AAF45911.1|  631|Drosophila melanogaster CG6428-PA
           protein.
          Length = 631

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +1

Query: 82  DSKSDTDAKETGGDLTSASDTKIDSNSLNESESKSFHFQEPKSLSDVG 225
           D K         G+LTS    K++   L ++ ++S H   P+ L  +G
Sbjct: 394 DMKKQMMQSSLRGELTSLKAPKMEDYDLVDAVARSLHLSSPQELDQLG 441


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,105,955
Number of Sequences: 53049
Number of extensions: 549674
Number of successful extensions: 1680
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1680
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2930645700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)