Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0170.Seq
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033510-7|CAA22069.1|  124|Caenorhabditis elegans Hypothetical ...    30   1.3  
Z50874-8|CAA90768.1|  197|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U37430-5|AAB52674.2|  389|Caenorhabditis elegans Set (trithorax/...    29   4.0  
AL034393-16|CAA22331.2|  286|Caenorhabditis elegans Hypothetical...    29   4.0  
U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defe...    27   9.2  
U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defe...    27   9.2  
AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein.     27   9.2  

>AL033510-7|CAA22069.1|  124|Caenorhabditis elegans Hypothetical
           protein Y40H7A.11 protein.
          Length = 124

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 671 WWDCTVLSFCCASFYYCYLFY 609
           WW C  LSFC   F+ CYL +
Sbjct: 82  WWLCATLSFC--FFFCCYLLF 100


>Z50874-8|CAA90768.1|  197|Caenorhabditis elegans Hypothetical
           protein R10E4.7 protein.
          Length = 197

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 243 FIPRFISKSSIDGKTINSKTSDLFTSKDSIDSATSVLEERRFTRDV 380
           +IPR I + S+DG  + + T D+ +  + I +      E+R T  +
Sbjct: 75  WIPRLIEEKSVDGVAMRNFTDDVISLDNEIFTMIWDTREQRITHSI 120


>U37430-5|AAB52674.2|  389|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 12
           protein.
          Length = 389

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 418 PIPRPRRGQNRNQILVVPTLVPCQNRTVKFKQPRCTDRDNKE 543
           P+P+ RRG+ R   +  P  VP   +T +   P   + ++KE
Sbjct: 284 PVPKSRRGRKRKTDVTAP--VPLATKTKRHSPPAENESEDKE 323


>AL034393-16|CAA22331.2|  286|Caenorhabditis elegans Hypothetical
           protein Y18D10A.21 protein.
          Length = 286

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 19/77 (24%), Positives = 31/77 (40%)
 Frame = +1

Query: 7   VKIKAKEEKDVEXXXXXXXXXXXQPDSKSDTDAKETGGDLTSASDTKIDSNSLNESESKS 186
           V+ KA E ++ +            P  KSD                K+D+N+L   E K+
Sbjct: 202 VEKKADEIREKKKKAFPLMLKDYHPAPKSDYSGYSAMTVFEGVPSAKLDANNLKSVEQKT 261

Query: 187 FHFQEPKSLSDVGLSEK 237
              +EP+ +S V   +K
Sbjct: 262 AAVKEPEPISTVAPIKK 278


>U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying
           defective protein 27,isoform b protein.
          Length = 1124

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
 Frame = +2

Query: 482 RAKTGQSSSNSPDVQT-ETIKNNSWHLGTFKSTPTYKSEAS-------PLNRIDSSSKMK 637
           R +T  S S +PD ++  T+ N + +L T + TPT K   S       PL+    ++  K
Sbjct: 506 RRRTPSSMSETPDRRSPSTVSNGAPNL-TAEETPTKKLNGSVKRAPKRPLHNGVINNVEK 564

Query: 638 HNKMIEQCSPTT 673
            N   E  SPTT
Sbjct: 565 SNSSEEPASPTT 576


>U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying
           defective protein 27,isoform a protein.
          Length = 1129

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
 Frame = +2

Query: 482 RAKTGQSSSNSPDVQT-ETIKNNSWHLGTFKSTPTYKSEAS-------PLNRIDSSSKMK 637
           R +T  S S +PD ++  T+ N + +L T + TPT K   S       PL+    ++  K
Sbjct: 509 RRRTPSSMSETPDRRSPSTVSNGAPNL-TAEETPTKKLNGSVKRAPKRPLHNGVINNVEK 567

Query: 638 HNKMIEQCSPTT 673
            N   E  SPTT
Sbjct: 568 SNSSEEPASPTT 579


>AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein.
          Length = 1129

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
 Frame = +2

Query: 482 RAKTGQSSSNSPDVQT-ETIKNNSWHLGTFKSTPTYKSEAS-------PLNRIDSSSKMK 637
           R +T  S S +PD ++  T+ N + +L T + TPT K   S       PL+    ++  K
Sbjct: 509 RRRTPSSMSETPDRRSPSTVSNGAPNL-TAEETPTKKLNGSVKRAPKRPLHNGVINNVEK 567

Query: 638 HNKMIEQCSPTT 673
            N   E  SPTT
Sbjct: 568 SNSSEEPASPTT 579


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,003,165
Number of Sequences: 27780
Number of extensions: 284685
Number of successful extensions: 1036
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)