Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0170.Seq
(676 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g54660.1 68416.m06048 gluthatione reductase, chloroplast near... 31 0.70
At5g17580.1 68418.m02062 phototropic-responsive NPH3 family prot... 31 0.93
At3g06210.1 68416.m00714 expressed protein contains Prosite PS00... 30 1.6
At4g38900.2 68417.m05511 bZIP protein vsf-1 protein, Lycopersico... 29 2.1
At4g38900.1 68417.m05510 bZIP protein vsf-1 protein, Lycopersico... 29 2.1
At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein ... 29 2.8
At2g29020.1 68415.m03529 Rab5-interacting family protein similar... 29 2.8
At5g48560.1 68418.m06005 basic helix-loop-helix (bHLH) family pr... 29 3.8
At3g21290.1 68416.m02690 dentin sialophosphoprotein-related cont... 29 3.8
At2g38440.1 68415.m04721 expressed protein 28 5.0
At5g56360.1 68418.m07034 calmodulin-binding protein similar to a... 28 6.6
At4g33240.1 68417.m04731 phosphatidylinositol-4-phosphate 5-kina... 28 6.6
At2g17970.1 68415.m02084 oxidoreductase, 2OG-Fe(II) oxygenase fa... 27 8.7
>At3g54660.1 68416.m06048 gluthatione reductase, chloroplast nearly
identical to SP|P42770 Glutathione reductase,
chloroplast precursor (EC 1.8.1.7) (GR) (GRASE)
{Arabidopsis thaliana}; identical to cDNA glutathione
reductase GI:451197
Length = 565
Score = 31.1 bits (67), Expect = 0.70
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -1
Query: 499 LSGFGTGLKWGLPKSDFDSDLGV 431
+ GFG +K GL K+DFD+ +GV
Sbjct: 506 IQGFGVAVKAGLTKADFDATVGV 528
>At5g17580.1 68418.m02062 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 548
Score = 30.7 bits (66), Expect = 0.93
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = -3
Query: 248 DEESFSLNPTSERLLGSWKWKDLLSLSFREFESILVSEADVRSPPVSFASVS 93
+ + + NP + WK +DL+++ R +E ++ RS PV + +S
Sbjct: 164 ETDDYRPNPRRRLFVIDWKSEDLITIPLRLYEPFMIRAIKSRSIPVEYIVLS 215
>At3g06210.1 68416.m00714 expressed protein contains Prosite
PS00616: Histidine acid phosphatases phosphohistidine
signature;
Length = 840
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -3
Query: 284 FTINRRFRNESRDEESFSLNPTSERLLGSWKWKDLLSLSFREFESILVSE 135
F +N RF ++ ++ +L P ERL+ WKDL R + ++S+
Sbjct: 367 FAVNERFAEDTLEKIGINL-PVIERLVEMLNWKDLQEEEIRRSAAEILSK 415
>At4g38900.2 68417.m05511 bZIP protein vsf-1 protein, Lycopersicon
esculentum, PIR2:S52203
Length = 547
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = +1
Query: 82 DSKSDTDAKETGGDLTSASDTKIDSNSLNESESKSFH 192
+++ D ++ G T+ SDT+ +S+S+NES + + +
Sbjct: 256 ENRDDMESSRASGTKTNGSDTEGESSSVNESANNNMN 292
>At4g38900.1 68417.m05510 bZIP protein vsf-1 protein, Lycopersicon
esculentum, PIR2:S52203
Length = 553
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = +1
Query: 82 DSKSDTDAKETGGDLTSASDTKIDSNSLNESESKSFH 192
+++ D ++ G T+ SDT+ +S+S+NES + + +
Sbjct: 256 ENRDDMESSRASGTKTNGSDTEGESSSVNESANNNMN 292
>At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 446
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 261 SKSSIDGKTINSKTSDLFTSKDSIDSATSVLEERRFTRD 377
S SS + KT TS +F +K + + T ++ER FTRD
Sbjct: 370 SSSSSNSKTFGLMTS-IFNNKQAENIKTKEVDERGFTRD 407
>At2g29020.1 68415.m03529 Rab5-interacting family protein similar to
Protein C20orf24 (Rab5-interacting protein) (RIP5)
(PNAS-11) (Swiss-Prot:Q9BUV8) [Homo sapiens]; contains
transmembrane domains
Length = 133
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 488 KTGQSS-SNSPDVQTETIKNNSWHLGTFKSTPTYKSEAS 601
K G+SS S+S Q E I + + HLG+F + SEAS
Sbjct: 2 KEGKSSKSSSQQEQHEQIYHQNSHLGSFNFAKLFDSEAS 40
>At5g48560.1 68418.m06005 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 498
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 479 SRAKTGQSSSNSPDVQTETIKNNSWHLGTFKSTPTYKSEASP 604
SR+ G++++N P + NNS L STP K+ SP
Sbjct: 169 SRSFNGRTNTNLPINNGNNMVNNSGKLTRVSSTPALKALVSP 210
>At3g21290.1 68416.m02690 dentin sialophosphoprotein-related
contains weak similarity to Dentin sialophosphoprotein
precursor (Swiss-Prot:Q9NZW4) [Homo sapiens]
Length = 1192
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1
Query: 82 DSKSDTDAKETGGDLTSASDTKIDSNSLNESESKS 186
DS SD+D ++G D SA+ + DS S ++SE+ S
Sbjct: 498 DSDSDSDNSDSGSDSKSAAGS--DSGSSSDSEASS 530
>At2g38440.1 68415.m04721 expressed protein
Length = 1399
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 121 DLTSASDTKIDSNSLNESESKSFHFQEPKSLSD 219
DLTS +D +D+ + ESE+++ PKS SD
Sbjct: 374 DLTSEADNYVDAPATMESETETDDECRPKSRSD 406
>At5g56360.1 68418.m07034 calmodulin-binding protein similar to
alpha glucosidase II beta subunit from GI:2104691 [Mus
musculus]
Length = 647
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 530 ETIKNNSWHLGTFKSTPTYKSEASPLNRIDSSSKMKHNKMIEQCS 664
+T+KN + F++TP KSEA + + S K NK+ + S
Sbjct: 462 KTVKNILLAVNLFQTTPVDKSEADRVRKEYDESSSKLNKIQSRIS 506
>At4g33240.1 68417.m04731 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to SP|Q9Z1T6 FYVE
finger-containing phosphoinositide kinase (EC 2.7.1.68)
(1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
(PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF01363: FYVE zinc finger, PF00118:
TCP-1/cpn60 chaperonin family
Length = 1756
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +2
Query: 491 TGQSSSNSP--DVQTETIKNNSWHLGTFKSTPT-YKSEASPLNRIDSSSKMKHNKMIEQC 661
T S+ SP +++ E K N G F S+ T ++ + +RID S ++ HN C
Sbjct: 679 TVSSAEKSPTTELRGEPHKANGDLTGNFTSSKTHFQGKLDGNDRIDPSERLLHNLDTVYC 738
Query: 662 SP 667
P
Sbjct: 739 KP 740
>At2g17970.1 68415.m02084 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to At2g17960, At4g36090; contains
PF03171 2OG-Fe(II) oxygenase superfamily domain
Length = 507
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = -3
Query: 260 NESRDEESFSLNPTSERLLGSWKWKDLLSLSFRE-FESILVSE---ADVRSPPVSFASVS 93
+++ DE+S + LGSWK +++ SF E F S+L S + SP + +A ++
Sbjct: 85 DDNYDEKSENGEDCDNHSLGSWKGSEIVFGSFPEDFSSVLQSRPAVVETASPRMRWADMA 144
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,292,347
Number of Sequences: 28952
Number of extensions: 271242
Number of successful extensions: 906
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -