Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0169.Seq
(766 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 120 2e-28
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 103 4e-23
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 99 8e-22
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 92 9e-20
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 90 4e-19
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 89 6e-19
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 89 8e-19
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 87 3e-18
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 81 1e-16
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 81 1e-16
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 81 2e-16
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 80 3e-16
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 77 3e-15
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 73 5e-14
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 73 6e-14
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 73 6e-14
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 71 2e-13
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 69 1e-12
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 65 9e-12
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 63 4e-11
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 62 8e-11
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 58 1e-09
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 58 2e-09
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 50 3e-07
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 49 8e-07
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 46 6e-06
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 46 6e-06
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 46 8e-06
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 44 3e-05
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 36 0.008
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 33 0.034
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 28 1.3
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 28 1.3
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 28 1.7
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 28 1.7
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 27 2.9
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 26 6.8
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||... 26 6.8
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch... 26 6.8
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces... 25 9.0
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|... 25 9.0
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 120 bits (289), Expect = 2e-28
Identities = 51/89 (57%), Positives = 72/89 (80%)
Frame = +1
Query: 241 QEIWLPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNS 420
Q+ W PA+ +HGDK Q ERD VL +F+ G++ I+VATDVA+RG+DV GI +V N+D+P +
Sbjct: 391 QDGW-PALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGN 449
Query: 421 SEDYIHRIGRTGRSKSKGTSYAFFTPSNS 507
+EDY+HRIGRTGR+ +KGT+Y +FT N+
Sbjct: 450 TEDYVHRIGRTGRAGAKGTAYTYFTSDNA 478
Score = 76.6 bits (180), Expect = 4e-15
Identities = 37/84 (44%), Positives = 59/84 (70%)
Frame = +2
Query: 2 KEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPG 181
KEV++LA DYL DYIQ+ +GSL L+A+HNI QIV++ +K +L ++E+ + ++
Sbjct: 312 KEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKDRD-- 369
Query: 182 AKTIIFVETKRKAENISRNIRRYG 253
K +IF TKR A++I+R +R+ G
Sbjct: 370 NKVLIFTGTKRVADDITRFLRQDG 393
Score = 32.3 bits (70), Expect = 0.078
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +3
Query: 510 QAKDLVSVLQEANQMISPQLQSMA 581
QA++LVS+L EA Q I P+L+ MA
Sbjct: 480 QARELVSILSEAKQDIDPKLEEMA 503
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 103 bits (246), Expect = 4e-23
Identities = 44/83 (53%), Positives = 61/83 (73%)
Frame = +1
Query: 256 PAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYI 435
PA +HGD+TQ+ER+ L F+ GR SI+VAT VA+RGLD+ + +VIN+D P +DY+
Sbjct: 456 PATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYV 515
Query: 436 HRIGRTGRSKSKGTSYAFFTPSN 504
HRIGRTGR+ + G + AFF +N
Sbjct: 516 HRIGRTGRAGNTGQAVAFFNRNN 538
Score = 44.8 bits (101), Expect = 1e-05
Identities = 26/77 (33%), Positives = 46/77 (59%)
Frame = +2
Query: 2 KEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPG 181
++++ LA D+L DY+ +++G + S + NI Q V ++ EK + L +L + P
Sbjct: 376 RDIQLLARDFLKDYVFLSVGRVG-STSENITQKVVHVEDSEKRSYLLDILHTL----PPE 430
Query: 182 AKTIIFVETKRKAENIS 232
T+IFVETKR A+ ++
Sbjct: 431 GLTLIFVETKRMADTLT 447
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 98.7 bits (235), Expect = 8e-22
Identities = 44/81 (54%), Positives = 59/81 (72%)
Frame = +1
Query: 262 VCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHR 441
V +HGD +Q R + L FK G+ +LVATDVAARGLD+ ++ VIN +P + EDY+HR
Sbjct: 444 VGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHR 503
Query: 442 IGRTGRSKSKGTSYAFFTPSN 504
IGRTGR+ +KGT+ FFTP +
Sbjct: 504 IGRTGRANTKGTAITFFTPQD 524
Score = 48.8 bits (111), Expect = 8e-07
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Frame = +2
Query: 2 KEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQE-HEKENKLNVLLQEIGQSQEP 178
+ V+ LA +L D ++I IGS +L+A+ NI QIV+I + KE L+ LL++ S
Sbjct: 357 ESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRSKERMLDNLLRKHLSSGGK 416
Query: 179 GAKTIIFVETKRKAENISRNIRR 247
K +IFV K++A + + R
Sbjct: 417 DDKILIFVLYKKEAARVEGTLAR 439
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 91.9 bits (218), Expect = 9e-20
Identities = 39/76 (51%), Positives = 55/76 (72%)
Frame = +1
Query: 268 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 447
+HG+ Q +R+E L +F++G +L+ATD+ ARG+D G+K VINFD+P S YIHRIG
Sbjct: 318 IHGELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIG 377
Query: 448 RTGRSKSKGTSYAFFT 495
RTGR+ + G + FFT
Sbjct: 378 RTGRAGNTGQAVTFFT 393
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 89.8 bits (213), Expect = 4e-19
Identities = 37/77 (48%), Positives = 51/77 (66%)
Frame = +1
Query: 268 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 447
+HG K Q +RD + +K G +L+AT V ARGLDV ++ V+N+D PN EDY+HR+G
Sbjct: 698 IHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVG 757
Query: 448 RTGRSKSKGTSYAFFTP 498
RTGR+ G + F TP
Sbjct: 758 RTGRAGHTGVAVTFITP 774
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 89.0 bits (211), Expect = 6e-19
Identities = 39/92 (42%), Positives = 58/92 (63%)
Frame = +1
Query: 232 KEHQEIWLPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDY 411
K+ I AV +HG K+Q++R+ + Q + A ILVATD+A RG+D+ + V+N++
Sbjct: 534 KQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNM 593
Query: 412 PNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNS 507
S EDY HRIGRTGR+ GT+ F P ++
Sbjct: 594 AKSIEDYTHRIGRTGRAGKSGTAITFLGPEDT 625
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 88.6 bits (210), Expect = 8e-19
Identities = 40/100 (40%), Positives = 62/100 (62%)
Frame = +1
Query: 196 FC*NQEKS*EHIKEHQEIWLPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLD 375
FC ++ K ++ +E MHG+ Q+ERD ++ F++G + +L+ TD+ ARG+D
Sbjct: 266 FCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWARGID 325
Query: 376 VDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFT 495
V + VIN+D P + E+YIHRIGR+GR KG + F T
Sbjct: 326 VQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVT 365
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 86.6 bits (205), Expect = 3e-18
Identities = 38/76 (50%), Positives = 52/76 (68%)
Frame = +1
Query: 268 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 447
MHGD Q +RD ++++F+ G + IL+ TD+ ARG+DV + VIN+D P + E+YIHRIG
Sbjct: 288 MHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIG 347
Query: 448 RTGRSKSKGTSYAFFT 495
R GR KG S F T
Sbjct: 348 RGGRFGRKGVSINFVT 363
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 81.4 bits (192), Expect = 1e-16
Identities = 40/79 (50%), Positives = 50/79 (63%)
Frame = +1
Query: 259 AVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIH 438
A+ +HG +Q R L +FK G S LVATDVAARGLD+ + VIN+D P S+ YIH
Sbjct: 312 AIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIH 371
Query: 439 RIGRTGRSKSKGTSYAFFT 495
R+GRT R+ G S A T
Sbjct: 372 RVGRTARAGRAGKSIALVT 390
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 81.4 bits (192), Expect = 1e-16
Identities = 37/76 (48%), Positives = 50/76 (65%)
Frame = +1
Query: 268 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 447
+H + Q+ER L +F+ A ILVATDVA+RGLD+ ++ VINFD P +DYIHR+G
Sbjct: 288 LHSEMVQRERINSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVG 347
Query: 448 RTGRSKSKGTSYAFFT 495
RT R+ G S + T
Sbjct: 348 RTARAGRSGESISIVT 363
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 80.6 bits (190), Expect = 2e-16
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Frame = +1
Query: 253 LPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDY 432
LP + +HG + QQ R ++F IL+ T+VAARGLD+ + +++ +D P+ DY
Sbjct: 361 LPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDY 420
Query: 433 IHRIGRTGR-SKSKGTSYAFFTPS 501
IHR+GRT R +K G S F PS
Sbjct: 421 IHRVGRTARGTKGTGKSLMFLAPS 444
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 80.2 bits (189), Expect = 3e-16
Identities = 35/83 (42%), Positives = 53/83 (63%)
Frame = +1
Query: 241 QEIWLPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNS 420
+E P++C+HG Q+ER + FK+ I VATDV RG+D++ + VIN+D P+S
Sbjct: 316 RECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDS 375
Query: 421 SEDYIHRIGRTGRSKSKGTSYAF 489
+ Y+HR+GR GR +KG + F
Sbjct: 376 PDSYLHRVGRAGRFGTKGLAITF 398
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 77.0 bits (181), Expect = 3e-15
Identities = 33/74 (44%), Positives = 52/74 (70%)
Frame = +1
Query: 253 LPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDY 432
L A +HG +Q++R L F++G+ + L+ATDVA+RG+D+ GI+ VIN++ P + E Y
Sbjct: 529 LNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVY 588
Query: 433 IHRIGRTGRSKSKG 474
+HR+GRT R+ G
Sbjct: 589 LHRVGRTARAGRSG 602
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 72.9 bits (171), Expect = 5e-14
Identities = 35/102 (34%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Frame = +1
Query: 244 EIWLPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSS 423
E+ +P+ +H Q++R + L +FK +LV TDVAARG+D+ + +VI++ P+++
Sbjct: 411 ELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTA 470
Query: 424 EDYIHRIGRTGRSKSKGTSYAFFTPSN-SLKPKIWYLFYKKL 546
+ Y+HR GRT R+ G S P S ++ Y KK+
Sbjct: 471 DMYVHRSGRTARANEDGVSILMCGPKELSQLKRLCYRLKKKI 512
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 72.5 bits (170), Expect = 6e-14
Identities = 31/88 (35%), Positives = 50/88 (56%)
Frame = +1
Query: 232 KEHQEIWLPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDY 411
K+ E+ H Q R+ V + F+ G LV +D+ RG+D+ + VINFD+
Sbjct: 299 KKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDF 358
Query: 412 PNSSEDYIHRIGRTGRSKSKGTSYAFFT 495
P ++E Y+HRIGR+GR +G + +F +
Sbjct: 359 PKNAETYLHRIGRSGRFGHRGLAISFIS 386
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 72.5 bits (170), Expect = 6e-14
Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Frame = +1
Query: 268 MHGDKTQQERDEVLYQFKEGRAS---ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIH 438
+HG +QQ R L F S IL+ TDVAARGLD+ + V+ +D P S++DY+H
Sbjct: 473 LHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLH 532
Query: 439 RIGRTGRSKSKGTSYAFFTPSNS 507
RIGRT R+ G + F P S
Sbjct: 533 RIGRTARAGHNGAAIMFLLPKES 555
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 70.9 bits (166), Expect = 2e-13
Identities = 31/77 (40%), Positives = 47/77 (61%)
Frame = +1
Query: 253 LPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDY 432
+P +H T +R + F++ ++ IL ATDV ARG+D I V+ P++++DY
Sbjct: 318 IPCFILHSGLTTAQRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDY 377
Query: 433 IHRIGRTGRSKSKGTSY 483
IHRIGRTGR+ G +Y
Sbjct: 378 IHRIGRTGRAGKTGEAY 394
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 68.5 bits (160), Expect = 1e-12
Identities = 31/78 (39%), Positives = 41/78 (52%)
Frame = +1
Query: 268 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 447
+HG + Q R EV +F R +L TD+ ARGLD + +VI D P + YIHR+G
Sbjct: 315 LHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVG 374
Query: 448 RTGRSKSKGTSYAFFTPS 501
RT R G + PS
Sbjct: 375 RTARYNRSGNALLLLLPS 392
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 65.3 bits (152), Expect = 9e-12
Identities = 27/73 (36%), Positives = 48/73 (65%)
Frame = +1
Query: 268 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 447
++G Q+ R + F+ G+ ++LV TDVA+RG+D+ + VIN+D+P + ++HR+G
Sbjct: 376 IYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRVG 435
Query: 448 RTGRSKSKGTSYA 486
RT R+ G +Y+
Sbjct: 436 RTARAGRTGWAYS 448
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 63.3 bits (147), Expect = 4e-11
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Frame = +1
Query: 265 CMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYP------NSSE 426
C+ G+ +RD ++ F+ G + +LV T+V ARG+DV + V+N+D P +
Sbjct: 381 CLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQ 440
Query: 427 DYIHRIGRTGRSKSKGTSYAF 489
Y+HRIGRTGR G S F
Sbjct: 441 TYLHRIGRTGRFGRVGVSINF 461
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 62.1 bits (144), Expect = 8e-11
Identities = 27/67 (40%), Positives = 45/67 (67%)
Frame = +1
Query: 283 TQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRS 462
++ ER +++ +F G ++LV +D+ ARG+DV + VIN+D P S Y+HRIGRT R+
Sbjct: 472 SRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARA 531
Query: 463 KSKGTSY 483
+G ++
Sbjct: 532 GREGFAW 538
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 58.4 bits (135), Expect = 1e-09
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Frame = +1
Query: 262 VCMHGDKTQQERDEVLYQFKEG-RASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIH 438
V +HG + Q R +FK+ + ++L TD+A+RGLD+ + +V+ D P + + H
Sbjct: 286 VALHGQQVQSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSH 345
Query: 439 RIGRTGRSKSKGTS 480
R GR GR+ G +
Sbjct: 346 RCGRAGRAGRAGVA 359
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 57.6 bits (133), Expect = 2e-09
Identities = 23/50 (46%), Positives = 35/50 (70%)
Frame = +1
Query: 361 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSL 510
ARGLD + + V+NFD P++++ YIHRIGRT R+ GT+ +F P + +
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSFVVPKSEV 436
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 50.4 bits (115), Expect = 3e-07
Identities = 25/71 (35%), Positives = 41/71 (57%)
Frame = +1
Query: 283 TQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRS 462
+Q+ ++E + QF++G + L+AT + GLD+ + +I +D S + R+GRTGR
Sbjct: 477 SQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYDASASPIRMLQRMGRTGR- 535
Query: 463 KSKGTSYAFFT 495
K KG Y T
Sbjct: 536 KRKGYIYMLLT 546
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 48.8 bits (111), Expect = 8e-07
Identities = 24/61 (39%), Positives = 35/61 (57%)
Frame = +1
Query: 286 QQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSK 465
Q ++ E + QF+ G + LVAT + GLD+ +I +D +S I R+GRTGR K
Sbjct: 517 QMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSSPIRTIQRMGRTGRKK 576
Query: 466 S 468
S
Sbjct: 577 S 577
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 46.0 bits (104), Expect = 6e-06
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = +1
Query: 274 GDKTQQERDEVLYQFKE--GRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 447
GD + +ER F+ G+ I++AT G++ G++ V+++ P SS DY+ G
Sbjct: 1451 GDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETG 1510
Query: 448 RTGRSKSKGTSYAFFTPSNS 507
R GR + F+ +S
Sbjct: 1511 RAGRDGKYAIAALFYEKYDS 1530
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 46.0 bits (104), Expect = 6e-06
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = +1
Query: 274 GDKTQQERDEVLYQFKE--GRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 447
GD + +ER F+ G+ I++AT G++ G++ V+++ P SS DY+ G
Sbjct: 1451 GDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETG 1510
Query: 448 RTGRSKSKGTSYAFFTPSNS 507
R GR + F+ +S
Sbjct: 1511 RAGRDGKYAIAALFYEKYDS 1530
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 45.6 bits (103), Expect = 8e-06
Identities = 24/88 (27%), Positives = 39/88 (44%)
Frame = +1
Query: 232 KEHQEIWLPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDY 411
K + L A H + ER + +++ G I+VAT G+D +++VI+ +
Sbjct: 761 KLRNDYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGMGVDKGDVRFVIHHSF 820
Query: 412 PNSSEDYIHRIGRTGRSKSKGTSYAFFT 495
P S E Y GR GR F++
Sbjct: 821 PKSLEGYYQETGRAGRDGKPAHCIMFYS 848
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 43.6 bits (98), Expect = 3e-05
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = +1
Query: 283 TQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRS 462
T + + + L++FK G+ ++L+AT VA G+DV VI F+ + Y+ GR
Sbjct: 408 TFRRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYVQSRGRARAM 467
Query: 463 KSK 471
SK
Sbjct: 468 ASK 470
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 35.5 bits (78), Expect = 0.008
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +1
Query: 283 TQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR 459
T QER ++ + G+ ++AT+ G+D+ + VI +P S + + GR GR
Sbjct: 595 TVQERRKIESEMFNGKLYGIIATNALELGIDIGSLDAVITIGFPYSLSNLRQQFGRAGR 653
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 33.5 bits (73), Expect = 0.034
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Frame = +1
Query: 196 FC*NQEKS*EHIKEHQEIWLPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLD 375
FC N E S + +++ + A + G+ ER+ ++ F++ + +LV V G D
Sbjct: 271 FCINVEHSLKVCNAFRKLGIDARALFGETNDSERETLIQDFRKKKFPVLVNCMVLTEGTD 330
Query: 376 VDGIKYVINFDYPNSSEDYI-HRIGR 450
+ I ++ P SS + + IGR
Sbjct: 331 IPNIDCLM-IARPTSSPNLLTQMIGR 355
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 325 GRASILVATDVAARGLDVDGIKYVINFDY 411
G ++VAT++A L V GI YV++ Y
Sbjct: 757 GVRKVVVATNIAETSLTVHGISYVVDTGY 785
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 28.3 bits (60), Expect = 1.3
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 325 GRASILVATDVAARGLDVDGIKYVIN 402
G +++AT++A L +DGI YV++
Sbjct: 777 GGRKVVIATNIAETSLTIDGIYYVVD 802
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = +1
Query: 211 EKS*EHIKEHQEIWLPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIK 390
E S H E + +P + +H T E+ V + ++ +T++A + +DGI
Sbjct: 257 EDSLIHASEDCQTLVP-LPLHAGLTVDEQMRVFNIYDGDFRKVIFSTNIAETSITIDGIV 315
Query: 391 YVIN 402
YV++
Sbjct: 316 YVVD 319
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 283 TQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVIN 402
T +++ +V EG +VAT+VA + + I+YV++
Sbjct: 712 TTEDQMKVFDSSPEGHRMCIVATNVAETSITIPNIRYVVD 751
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -2
Query: 342 KNTSTTFLELIQNFISFLLSFIAMHTNSWQPYL 244
KNTS+ + ++FIS L+ A + +QPYL
Sbjct: 1725 KNTSSPVPHIRESFISLLIYLPATFGSRFQPYL 1757
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 6.8
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = +1
Query: 337 ILVATDVAARGLDVDGIKYVIN 402
++++T++A L +DGI YV++
Sbjct: 354 VVISTNIAETSLTIDGIVYVVD 375
>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 6.8
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = +1
Query: 337 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTP 498
+ VA RGL + I ++ + S Y H GR G G + F P
Sbjct: 474 VFVANPSEIRGLHLPSITHIFHLWSTFSGVAYQHIAGRLGAMGQTGKIFNFIIP 527
>SPCC4F11.04c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +3
Query: 429 LHPSY-WENWTFKIKRNIICFLYPFKFP 509
LHP Y + WT ++ RN I YP+ P
Sbjct: 109 LHPDYEYILWTDEMSRNFIADNYPWFLP 136
>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 350
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +1
Query: 370 LDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTS 480
L +D + I YP S EDY + R SK S
Sbjct: 146 LIIDNLSMPIQLAYPTSPEDYAYLRLRRNTSKKSSLS 182
>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 221 QLFSWFQQKLLFSHQVLDFVQFLA 150
+L SW+ + +SH+V+D V + A
Sbjct: 309 KLVSWYDNEWGYSHRVVDLVAYTA 332
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,925,861
Number of Sequences: 5004
Number of extensions: 57439
Number of successful extensions: 214
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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