Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0169.Seq
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.      101   1e-23
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.58 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.58 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   5.4  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.5  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   9.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.5  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score =  101 bits (241), Expect = 1e-23
 Identities = 43/81 (53%), Positives = 59/81 (72%)
 Frame = +1

Query: 256 PAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYI 435
           P   +HGD+ Q++R+E L  FK GR SILVAT VAARGLD+  + +VIN+D P   ++Y+
Sbjct: 477 PTTSIHGDRLQRQREEALADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPKGIDEYV 536

Query: 436 HRIGRTGRSKSKGTSYAFFTP 498
           HRIGRTGR  ++G + +FF P
Sbjct: 537 HRIGRTGRVGNRGRATSFFDP 557



 Score = 31.9 bits (69), Expect = 0.007
 Identities = 20/76 (26%), Positives = 43/76 (56%)
 Frame = +2

Query: 5   EVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGA 184
           EV+ LA  +L +Y+ + +G +  + +       ++ + ++K++ L  +L+    S   G 
Sbjct: 395 EVQHLARRFLNNYLFLAVGIVGGACSDVEQNFYEVAR-NKKKDLLKEILERENDSGTLGG 453

Query: 185 KTIIFVETKRKAENIS 232
            T++FVE K+KA+ I+
Sbjct: 454 -TLVFVEMKKKADFIA 468


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 466 ILNVQFSQYDGCNPPTNLDNQNLLHI 389
           + NV+ + + G  PP  L+N  ++H+
Sbjct: 224 VANVRIADHRGVMPPVILENSGVVHV 249


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 466 ILNVQFSQYDGCNPPTNLDNQNLLHI 389
           + NV+ + + G  PP  L+N  ++H+
Sbjct: 224 VANVRIADHRGVMPPVILENSGVVHV 249


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 229 IKEHQEIWLPAVCMHGD 279
           I +  +IW+PA  +H D
Sbjct: 390 IPKEMKIWIPAFAIHRD 406


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 116 EHEKENKLNVLLQEIG 163
           ++  ENKLN  +++IG
Sbjct: 213 DYNLENKLNYFIEDIG 228


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 609 TRRHHHRNGRPSTAVVG*SS 550
           T  HHH+NG   +++V  +S
Sbjct: 170 TLGHHHQNGATPSSLVSSAS 189


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 461 QNQKEHHMLSLPLQIPSSQRFGICST 538
           Q Q++HH  S      + +RFG  S+
Sbjct: 101 QQQQQHHQDSSSEHASNQERFGYFSS 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,336
Number of Sequences: 438
Number of extensions: 3846
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)