Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0169.Seq
(766 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 123 1e-28
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 123 2e-28
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 113 9e-26
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 111 4e-25
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 111 4e-25
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 111 4e-25
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 111 5e-25
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 111 5e-25
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 111 5e-25
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 111 6e-25
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 111 6e-25
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 105 2e-23
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 91 1e-18
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 90 1e-18
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 90 2e-18
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 89 4e-18
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 88 5e-18
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 87 9e-18
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 86 2e-17
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 85 4e-17
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 85 4e-17
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 85 4e-17
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 85 5e-17
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 83 1e-16
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 83 2e-16
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 83 2e-16
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 83 3e-16
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 83 3e-16
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 81 6e-16
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 80 1e-15
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 79 2e-15
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 78 6e-15
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 78 6e-15
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 76 3e-14
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 75 7e-14
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 75 7e-14
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 75 7e-14
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 74 1e-13
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 73 2e-13
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 73 2e-13
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 73 2e-13
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 72 5e-13
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 71 6e-13
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 71 6e-13
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 71 6e-13
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 71 1e-12
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 69 3e-12
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 69 3e-12
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 67 1e-11
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 67 1e-11
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 67 1e-11
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 66 2e-11
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 66 2e-11
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 66 3e-11
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 65 6e-11
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 64 1e-10
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 64 1e-10
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 64 1e-10
At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative EUKARY... 64 1e-10
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 64 1e-10
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 62 4e-10
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 62 5e-10
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 58 6e-09
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 54 1e-07
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 48 7e-06
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 46 2e-05
At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative simila... 46 4e-05
At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low si... 45 5e-05
At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel factory-r... 43 2e-04
At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative 43 2e-04
At4g35740.2 68417.m05073 DNA helicase (RECQl3) identical to DNA ... 42 3e-04
At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA ... 42 3e-04
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila... 41 8e-04
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 41 8e-04
At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative simila... 36 0.030
At5g10370.1 68418.m01203 helicase domain-containing protein / IB... 36 0.039
At4g01020.1 68417.m00137 helicase domain-containing protein / IB... 36 0.039
At1g12700.1 68414.m01473 helicase domain-containing protein / pe... 36 0.039
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 34 0.090
At2g35340.1 68415.m04333 RNA helicase, putative similar to ATP-d... 33 0.28
At1g32490.1 68414.m04009 RNA helicase, putative similar to ATP-d... 33 0.28
At4g16680.1 68417.m02519 RNA helicase, putative similar to SP|Q1... 32 0.48
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-... 31 0.64
At3g43920.1 68416.m04701 ribonuclease III family protein similar... 31 0.64
At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative si... 30 1.5
At5g28237.2 68418.m03423 tryptophan synthase, beta subunit, puta... 29 3.4
At5g28237.1 68418.m03422 tryptophan synthase, beta subunit, puta... 29 3.4
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa... 29 3.4
At5g62170.1 68418.m07804 expressed protein various predicted pro... 29 4.5
At4g02000.1 68417.m00269 expressed protein low similarity to zin... 28 5.9
At1g33390.1 68414.m04133 helicase domain-containing protein simi... 28 5.9
At1g58050.1 68414.m06579 helicase domain-containing protein cont... 28 7.8
At1g26370.1 68414.m03217 RNA helicase, putative similar to SP|Q1... 28 7.8
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 123 bits (297), Expect = 1e-28
Identities = 53/84 (63%), Positives = 70/84 (83%)
Frame = +1
Query: 256 PAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYI 435
PA+ +HGDK+Q ERD VL +F+ G++ I+ ATDVAARGLDV +KYVIN+D+P S EDY+
Sbjct: 370 PALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYV 429
Query: 436 HRIGRTGRSKSKGTSYAFFTPSNS 507
HRIGRTGR+ +KGT+Y FFT +N+
Sbjct: 430 HRIGRTGRAGAKGTAYTFFTVANA 453
Score = 59.7 bits (138), Expect = 2e-09
Identities = 32/84 (38%), Positives = 54/84 (64%)
Frame = +2
Query: 2 KEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPG 181
KEV++L++ +L + ++ IGS L AN I QIVD+ E +K NKL LL++I G
Sbjct: 289 KEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDI----MDG 344
Query: 182 AKTIIFVETKRKAENISRNIRRYG 253
++ ++F++TK+ + I+R +R G
Sbjct: 345 SRILVFLDTKKGCDQITRQLRMDG 368
Score = 31.9 bits (69), Expect = 0.48
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +3
Query: 513 AKDLVSVLQEANQMISPQLQSM 578
AK+L ++LQEA Q +SP+L SM
Sbjct: 456 AKELTNILQEAGQKVSPELASM 477
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 123 bits (296), Expect = 2e-28
Identities = 54/84 (64%), Positives = 68/84 (80%)
Frame = +1
Query: 256 PAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYI 435
PA+ +HGDKTQ ERD VL +FK GR+ I+ ATDVAARGLDV IK V+N+D+PN+ EDYI
Sbjct: 436 PALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYI 495
Query: 436 HRIGRTGRSKSKGTSYAFFTPSNS 507
HRIGRTGR+ +KG ++ FFT N+
Sbjct: 496 HRIGRTGRAGAKGMAFTFFTHDNA 519
Score = 60.1 bits (139), Expect = 2e-09
Identities = 33/84 (39%), Positives = 51/84 (60%)
Frame = +2
Query: 2 KEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPG 181
+EV+ LA +L D + IGS L AN +I Q+++I EK N+L LL+++ G
Sbjct: 355 REVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQL----MDG 410
Query: 182 AKTIIFVETKRKAENISRNIRRYG 253
+K +IFVETKR + ++R +R G
Sbjct: 411 SKILIFVETKRGCDQVTRQLRMDG 434
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 113 bits (273), Expect = 9e-26
Identities = 49/78 (62%), Positives = 62/78 (79%)
Frame = +1
Query: 259 AVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIH 438
A +HGDK+Q ERD+VL QF+ GR +LVATDVAARGLDV I+ V+N+D+PN EDY+H
Sbjct: 500 AAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVH 559
Query: 439 RIGRTGRSKSKGTSYAFF 492
RIGRTGR+ + G +Y FF
Sbjct: 560 RIGRTGRAGATGLAYTFF 577
Score = 66.1 bits (154), Expect = 2e-11
Identities = 35/83 (42%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Frame = +2
Query: 2 KEVKKLAEDYLGDYIQINIGSL-QLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEP 178
KEV+K+A D L + Q+NIG++ +L AN +I Q +++ EK ++L +L+ SQEP
Sbjct: 418 KEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQILR----SQEP 473
Query: 179 GAKTIIFVETKRKAENISRNIRR 247
G+K IIF TKR + ++RN+ R
Sbjct: 474 GSKIIIFCSTKRMCDQLARNLTR 496
Score = 31.1 bits (67), Expect = 0.84
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 513 AKDLVSVLQEANQMISPQLQSMADR 587
A DL+ +L+ ANQ + PQ++ MA R
Sbjct: 585 ASDLIKILEGANQKVPPQVREMATR 609
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 111 bits (268), Expect = 4e-25
Identities = 49/83 (59%), Positives = 63/83 (75%)
Frame = +1
Query: 259 AVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIH 438
A +HGDK+Q ERD VL QF+ GR +LVATDVAARGLDV I+ V+N+D+PN EDY+H
Sbjct: 429 AAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVH 488
Query: 439 RIGRTGRSKSKGTSYAFFTPSNS 507
RIGRTGR+ + G ++ FF +S
Sbjct: 489 RIGRTGRAGATGQAFTFFGDQDS 511
Score = 63.3 bits (147), Expect = 2e-10
Identities = 34/83 (40%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Frame = +2
Query: 2 KEVKKLAEDYLGDYIQINIGSL-QLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEP 178
K V+K+A D L + Q+NIG++ +L AN +I Q +++ EK+ +L +L+ SQEP
Sbjct: 347 KGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILR----SQEP 402
Query: 179 GAKTIIFVETKRKAENISRNIRR 247
G+K IIF TKR + ++RN+ R
Sbjct: 403 GSKVIIFCSTKRMCDQLTRNLTR 425
Score = 31.5 bits (68), Expect = 0.64
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 513 AKDLVSVLQEANQMISPQLQSMADR 587
A DL+ +L+ ANQ + PQ++ MA R
Sbjct: 514 ASDLIKILEGANQRVPPQIREMATR 538
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 111 bits (268), Expect = 4e-25
Identities = 49/83 (59%), Positives = 63/83 (75%)
Frame = +1
Query: 259 AVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIH 438
A +HGDK+Q ERD VL QF+ GR +LVATDVAARGLDV I+ V+N+D+PN EDY+H
Sbjct: 429 AAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVH 488
Query: 439 RIGRTGRSKSKGTSYAFFTPSNS 507
RIGRTGR+ + G ++ FF +S
Sbjct: 489 RIGRTGRAGATGQAFTFFGDQDS 511
Score = 63.3 bits (147), Expect = 2e-10
Identities = 34/83 (40%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Frame = +2
Query: 2 KEVKKLAEDYLGDYIQINIGSL-QLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEP 178
K V+K+A D L + Q+NIG++ +L AN +I Q +++ EK+ +L +L+ SQEP
Sbjct: 347 KGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILR----SQEP 402
Query: 179 GAKTIIFVETKRKAENISRNIRR 247
G+K IIF TKR + ++RN+ R
Sbjct: 403 GSKVIIFCSTKRMCDQLTRNLTR 425
Score = 31.5 bits (68), Expect = 0.64
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 513 AKDLVSVLQEANQMISPQLQSMADR 587
A DL+ +L+ ANQ + PQ++ MA R
Sbjct: 514 ASDLIKILEGANQRVPPQIREMATR 538
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 111 bits (268), Expect = 4e-25
Identities = 49/83 (59%), Positives = 63/83 (75%)
Frame = +1
Query: 259 AVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIH 438
A +HGDK+Q ERD VL QF+ GR +LVATDVAARGLDV I+ V+N+D+PN EDY+H
Sbjct: 429 AAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVH 488
Query: 439 RIGRTGRSKSKGTSYAFFTPSNS 507
RIGRTGR+ + G ++ FF +S
Sbjct: 489 RIGRTGRAGATGQAFTFFGDQDS 511
Score = 63.3 bits (147), Expect = 2e-10
Identities = 34/83 (40%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Frame = +2
Query: 2 KEVKKLAEDYLGDYIQINIGSL-QLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEP 178
K V+K+A D L + Q+NIG++ +L AN +I Q +++ EK+ +L +L+ SQEP
Sbjct: 347 KGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILR----SQEP 402
Query: 179 GAKTIIFVETKRKAENISRNIRR 247
G+K IIF TKR + ++RN+ R
Sbjct: 403 GSKVIIFCSTKRMCDQLTRNLTR 425
Score = 31.5 bits (68), Expect = 0.64
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 513 AKDLVSVLQEANQMISPQLQSMADR 587
A DL+ +L+ ANQ + PQ++ MA R
Sbjct: 514 ASDLIKILEGANQRVPPQIREMATR 538
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 111 bits (267), Expect = 5e-25
Identities = 49/84 (58%), Positives = 62/84 (73%)
Frame = +1
Query: 256 PAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYI 435
PA +HGD+TQQER+ L FK GR ILVATDVAARGLD+ + +V+NFD PN +DY+
Sbjct: 434 PATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYV 493
Query: 436 HRIGRTGRSKSKGTSYAFFTPSNS 507
HRIGRTGR+ G + AFF +N+
Sbjct: 494 HRIGRTGRAGKSGIATAFFNENNA 517
Score = 48.8 bits (111), Expect = 4e-06
Identities = 25/75 (33%), Positives = 47/75 (62%)
Frame = +2
Query: 5 EVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGA 184
++++LA D++ +YI + +G + S+ I Q V+ QE +K + L LL ++Q+ +
Sbjct: 351 QIQRLAADFMSNYIFLAVGRVG-SSTDLITQRVEFVQESDKRSHLMDLLHAQRETQDKQS 409
Query: 185 KTIIFVETKRKAENI 229
T++FVETKR A+ +
Sbjct: 410 LTLVFVETKRGADTL 424
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 111 bits (267), Expect = 5e-25
Identities = 49/84 (58%), Positives = 62/84 (73%)
Frame = +1
Query: 256 PAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYI 435
PA +HGD+TQQER+ L FK GR ILVATDVAARGLD+ + +V+NFD PN +DY+
Sbjct: 434 PATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYV 493
Query: 436 HRIGRTGRSKSKGTSYAFFTPSNS 507
HRIGRTGR+ G + AFF +N+
Sbjct: 494 HRIGRTGRAGKSGIATAFFNENNA 517
Score = 48.8 bits (111), Expect = 4e-06
Identities = 25/75 (33%), Positives = 47/75 (62%)
Frame = +2
Query: 5 EVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGA 184
++++LA D++ +YI + +G + S+ I Q V+ QE +K + L LL ++Q+ +
Sbjct: 351 QIQRLAADFMSNYIFLAVGRVG-SSTDLITQRVEFVQESDKRSHLMDLLHAQRETQDKQS 409
Query: 185 KTIIFVETKRKAENI 229
T++FVETKR A+ +
Sbjct: 410 LTLVFVETKRGADTL 424
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 111 bits (267), Expect = 5e-25
Identities = 48/79 (60%), Positives = 63/79 (79%)
Frame = +1
Query: 259 AVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIH 438
AV +HGDKTQ ERD VL QF+ G++ +L+ATDVAARGLD+ I+ VIN+D+P EDY+H
Sbjct: 706 AVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVH 765
Query: 439 RIGRTGRSKSKGTSYAFFT 495
RIGRTGR+ + G ++ FFT
Sbjct: 766 RIGRTGRAGATGVAFTFFT 784
Score = 66.1 bits (154), Expect = 2e-11
Identities = 35/84 (41%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Frame = +2
Query: 2 KEVKKLAEDYLGDYIQINIGSL-QLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEP 178
KEV+K+A D L + +Q+NIG + +L+AN I Q V++ + EKE +L +L+ SQE
Sbjct: 624 KEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQILR----SQER 679
Query: 179 GAKTIIFVETKRKAENISRNIRRY 250
G+K IIF TKR ++++R++ R+
Sbjct: 680 GSKVIIFCSTKRLCDHLARSVGRH 703
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 513 AKDLVSVLQEANQMISPQLQSMADR 587
A DL+ VL+ ANQ + PQ++ +A R
Sbjct: 791 APDLIKVLEGANQQVPPQVRDIAMR 815
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 111 bits (266), Expect = 6e-25
Identities = 49/88 (55%), Positives = 64/88 (72%)
Frame = +1
Query: 256 PAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYI 435
PA +HGD++QQER+ L FK GR ILVATDVAARGLD+ + +V+NFD PN +DY+
Sbjct: 431 PATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYV 490
Query: 436 HRIGRTGRSKSKGTSYAFFTPSNSLKPK 519
HRIGRTGR+ + G + AFF +N+ K
Sbjct: 491 HRIGRTGRAGNSGLATAFFNDNNTTMAK 518
Score = 44.8 bits (101), Expect = 6e-05
Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Frame = +2
Query: 2 KEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLL--QEIGQSQE 175
+E+++LA D+L +YI + +G + S+ I+Q V+ + +K + L LL Q +Q
Sbjct: 345 REIQRLASDFLSNYIFLAVGRVG-SSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQG 403
Query: 176 PGAKTIIFVETKRKAENI 229
A T++FVETK+ A+++
Sbjct: 404 KQALTLVFVETKKGADSL 421
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 111 bits (266), Expect = 6e-25
Identities = 49/84 (58%), Positives = 61/84 (72%)
Frame = +1
Query: 256 PAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYI 435
PA +HGD+TQQER+ L FK GR ILVATDVAARGLD+ + +V+NFD PN +DY+
Sbjct: 444 PATSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYV 503
Query: 436 HRIGRTGRSKSKGTSYAFFTPSNS 507
HRIGRTGR+ G + AFF N+
Sbjct: 504 HRIGRTGRAGKSGLATAFFNDGNT 527
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Frame = +2
Query: 2 KEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLL--QEIGQSQE 175
+E+++LA D+L +YI + +G + S+ I+Q V+ + +K + L LL Q Q
Sbjct: 358 REIQRLAADFLANYIFLAVGRVG-SSTDLIVQRVEFVLDSDKRSHLMDLLHAQRENGIQG 416
Query: 176 PGAKTIIFVETKRKAENI 229
A T++FVETKR A+++
Sbjct: 417 KQALTLVFVETKRGADSL 434
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 105 bits (253), Expect = 2e-23
Identities = 47/82 (57%), Positives = 61/82 (74%)
Frame = +1
Query: 259 AVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIH 438
AV +HG+K Q ER L FKEG +LVATDVAARGLD+ ++ VIN+ +P ++EDY+H
Sbjct: 393 AVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVH 452
Query: 439 RIGRTGRSKSKGTSYAFFTPSN 504
RIGRTGR+ KG ++ FFTP N
Sbjct: 453 RIGRTGRAGKKGVAHTFFTPLN 474
Score = 54.4 bits (125), Expect = 8e-08
Identities = 26/84 (30%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Frame = +2
Query: 5 EVKKLAEDYLG-DYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPG 181
+V KLA++++ + I++ IGS+ L+ANH+++QI+++ E ++ +L LL++ +SQ+
Sbjct: 309 DVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDERARDQRLIALLEKYHKSQK-- 366
Query: 182 AKTIIFVETKRKAENISRNIRRYG 253
+ ++F K +AE + R +++ G
Sbjct: 367 NRVLVFALYKVEAERLERFLQQRG 390
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 90.6 bits (215), Expect = 1e-18
Identities = 42/104 (40%), Positives = 64/104 (61%)
Frame = +1
Query: 196 FC*NQEKS*EHIKEHQEIWLPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLD 375
F +QEK ++ + P + +HG K Q +R+ + FK ++L+AT VAARGLD
Sbjct: 782 FVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLD 841
Query: 376 VDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNS 507
V ++ V+NFD PN EDY+HR+GRTGR+ KG + F + ++
Sbjct: 842 VKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDA 885
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 90.2 bits (214), Expect = 1e-18
Identities = 39/79 (49%), Positives = 57/79 (72%)
Frame = +1
Query: 268 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 447
MHGDK Q+ERD+++ QF+ ++ +L+A+DV ARG+DV + +VIN+D PN+ E YIHRIG
Sbjct: 291 MHGDKRQKERDDIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIG 350
Query: 448 RTGRSKSKGTSYAFFTPSN 504
R GR +G + F S+
Sbjct: 351 RAGRFGREGVAINFVKSSD 369
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 89.8 bits (213), Expect = 2e-18
Identities = 40/83 (48%), Positives = 55/83 (66%)
Frame = +1
Query: 259 AVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIH 438
AV +HG K Q++RD + FK G+ +LVATDVA++GLD I++VIN+D P E+Y+H
Sbjct: 375 AVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVH 434
Query: 439 RIGRTGRSKSKGTSYAFFTPSNS 507
RIGRTGR G + F + S
Sbjct: 435 RIGRTGRCGKTGIATTFINKNQS 457
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 88.6 bits (210), Expect = 4e-18
Identities = 38/85 (44%), Positives = 59/85 (69%)
Frame = +1
Query: 268 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 447
+HGD +Q +R+ L F++G +ILVATDVAARGLDV + +I+++ PN++E ++HR G
Sbjct: 378 LHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTG 437
Query: 448 RTGRSKSKGTSYAFFTPSNSLKPKI 522
RTGR+ KG++ ++ S KI
Sbjct: 438 RTGRAGKKGSAILIYSQDQSRAVKI 462
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 88.2 bits (209), Expect = 5e-18
Identities = 39/83 (46%), Positives = 55/83 (66%)
Frame = +1
Query: 259 AVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIH 438
AV +HG K Q++R+ + FK G+ +LVATDVA++GLD I++VIN+D P E+Y+H
Sbjct: 424 AVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVH 483
Query: 439 RIGRTGRSKSKGTSYAFFTPSNS 507
RIGRTGR G + F + S
Sbjct: 484 RIGRTGRCGKTGIATTFINKNQS 506
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 87.4 bits (207), Expect = 9e-18
Identities = 38/74 (51%), Positives = 52/74 (70%)
Frame = +1
Query: 268 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 447
MHGD Q+ERD ++ +F+ G + +L+ TDV ARG+DV + VIN+D PN+ E YIHRIG
Sbjct: 304 MHGDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIG 363
Query: 448 RTGRSKSKGTSYAF 489
R+GR KG + F
Sbjct: 364 RSGRFGRKGVAINF 377
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 86.2 bits (204), Expect = 2e-17
Identities = 37/71 (52%), Positives = 54/71 (76%)
Frame = +1
Query: 268 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 447
+HGD +Q +R+ L F++G SILVATDVAARGLDV + VI+++ PN++E ++HR G
Sbjct: 390 LHGDISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTG 449
Query: 448 RTGRSKSKGTS 480
RTGR+ KG++
Sbjct: 450 RTGRAGKKGSA 460
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Frame = +2
Query: 8 VKKLAEDYLGDYIQIN-IGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGA 184
++ L + YL + + I+ +G I + + + + L++E G+ G
Sbjct: 307 IRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVKEHGK----GG 362
Query: 185 KTIIFVETKRKAENISRNI-RRYGCQ 259
K I+F +TKR A+ ++ + + Y C+
Sbjct: 363 KCIVFTQTKRDADRLAFGLAKSYKCE 388
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 85.4 bits (202), Expect = 4e-17
Identities = 35/78 (44%), Positives = 53/78 (67%)
Frame = +1
Query: 256 PAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYI 435
P++C+H +Q+ER FKEG ILVATD+ RG+D++ + VIN+D P+S++ Y+
Sbjct: 314 PSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYL 373
Query: 436 HRIGRTGRSKSKGTSYAF 489
HR+GR GR +KG + F
Sbjct: 374 HRVGRAGRFGTKGLAITF 391
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 85.4 bits (202), Expect = 4e-17
Identities = 35/78 (44%), Positives = 53/78 (67%)
Frame = +1
Query: 256 PAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYI 435
P++C+H +Q+ER FKEG ILVATD+ RG+D++ + VIN+D P+S++ Y+
Sbjct: 231 PSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYL 290
Query: 436 HRIGRTGRSKSKGTSYAF 489
HR+GR GR +KG + F
Sbjct: 291 HRVGRAGRFGTKGLAITF 308
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 85.4 bits (202), Expect = 4e-17
Identities = 35/78 (44%), Positives = 53/78 (67%)
Frame = +1
Query: 256 PAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYI 435
P++C+H +Q+ER FKEG ILVATD+ RG+D++ + VIN+D P+S++ Y+
Sbjct: 314 PSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYL 373
Query: 436 HRIGRTGRSKSKGTSYAF 489
HR+GR GR +KG + F
Sbjct: 374 HRVGRAGRFGTKGLAITF 391
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 85.0 bits (201), Expect = 5e-17
Identities = 39/99 (39%), Positives = 56/99 (56%)
Frame = +1
Query: 271 HGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGR 450
HGD Q RD ++ +F+ G + +L+ TD+ ARG+DV + VINFD P E+Y+HRIGR
Sbjct: 311 HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGR 370
Query: 451 TGRSKSKGTSYAFFTPSNSLKPKIWYLFYKKLIR*LAHN 567
+GR KG + F T + FY ++ L N
Sbjct: 371 SGRFGRKGVAINFMTSEDERMMADIQRFYNVVVEELPSN 409
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 83.4 bits (197), Expect = 1e-16
Identities = 34/78 (43%), Positives = 55/78 (70%)
Frame = +1
Query: 268 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 447
+HGD +Q +R+ L F++G+ ++LVATDVA+RGLD+ + VI+++ PN E ++HR G
Sbjct: 380 LHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSG 439
Query: 448 RTGRSKSKGTSYAFFTPS 501
RTGR+ +G++ T S
Sbjct: 440 RTGRAGKEGSAILMHTSS 457
Score = 32.7 bits (71), Expect = 0.28
Identities = 20/75 (26%), Positives = 36/75 (48%)
Frame = +2
Query: 8 VKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAK 187
VKKLA YL + + I++ Q + + + + + +L ++ G K
Sbjct: 297 VKKLARKYLDNPLNIDLVGDQ---DEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGK 353
Query: 188 TIIFVETKRKAENIS 232
TI+F +TKR A+ +S
Sbjct: 354 TIVFTQTKRDADEVS 368
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 83.0 bits (196), Expect = 2e-16
Identities = 35/75 (46%), Positives = 49/75 (65%)
Frame = +1
Query: 271 HGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGR 450
HGD Q RD ++ +F+ G + +L+ TD+ ARG+DV + VINFD P E+Y+HRIGR
Sbjct: 309 HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGR 368
Query: 451 TGRSKSKGTSYAFFT 495
+GR KG + F T
Sbjct: 369 SGRFGRKGVAINFVT 383
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 83.0 bits (196), Expect = 2e-16
Identities = 35/75 (46%), Positives = 49/75 (65%)
Frame = +1
Query: 271 HGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGR 450
HGD Q RD ++ +F+ G + +L+ TD+ ARG+DV + VINFD P E+Y+HRIGR
Sbjct: 309 HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGR 368
Query: 451 TGRSKSKGTSYAFFT 495
+GR KG + F T
Sbjct: 369 SGRFGRKGVAINFVT 383
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 82.6 bits (195), Expect = 3e-16
Identities = 42/97 (43%), Positives = 60/97 (61%)
Frame = +1
Query: 259 AVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIH 438
A+ + G TQ +R L +FK G +ILV TDVA+RGLD+ + VIN+D P +S+DYIH
Sbjct: 287 AIPISGQMTQSKRLGALNKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIH 346
Query: 439 RIGRTGRSKSKGTSYAFFTPSNSLKPKIWYLFYKKLI 549
R+GRT R+ G + N + + WY+ +KLI
Sbjct: 347 RVGRTARAGRSGVGISLV---NQYELE-WYIQIEKLI 379
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 82.6 bits (195), Expect = 3e-16
Identities = 36/76 (47%), Positives = 51/76 (67%)
Frame = +1
Query: 268 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 447
+H D ER+ + QF+ G +L+ATDV ARG+D GI VIN+D+P+S+ YIHRIG
Sbjct: 410 IHSDLPPGERENAVDQFRAGEKWVLIATDVIARGMDFKGINCVINYDFPDSASAYIHRIG 469
Query: 448 RTGRSKSKGTSYAFFT 495
R+GR+ G + F+T
Sbjct: 470 RSGRAGRSGEAITFYT 485
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 81.4 bits (192), Expect = 6e-16
Identities = 37/77 (48%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Frame = +1
Query: 268 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 447
+HGDK Q R E L +FK G +L+ATDVAARGLD+ +K V+N+D + ++HRIG
Sbjct: 503 LHGDKDQASRMETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIG 562
Query: 448 RTGRSKSK-GTSYAFFT 495
RTGR+ + G +Y T
Sbjct: 563 RTGRAGDRDGVAYTLVT 579
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 80.2 bits (189), Expect = 1e-15
Identities = 35/76 (46%), Positives = 51/76 (67%)
Frame = +1
Query: 268 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 447
+HG K+Q++R+ L F+ R ++LVATDV RG+D+ + +VIN+D P E Y HRIG
Sbjct: 606 LHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIG 665
Query: 448 RTGRSKSKGTSYAFFT 495
RTGR+ G + +F T
Sbjct: 666 RTGRAGKSGVATSFLT 681
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/82 (31%), Positives = 47/82 (57%)
Frame = +2
Query: 8 VKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAK 187
V++LA YL + + + IG+ + + I Q V + +E EK +L LL E+G+
Sbjct: 525 VERLARKYLRNPVVVTIGTAGKTTDL-ISQHVIMMKESEKFFRLQKLLDELGEKT----- 578
Query: 188 TIIFVETKRKAENISRNIRRYG 253
I+FV TK+ ++I++N+ + G
Sbjct: 579 AIVFVNTKKNCDSIAKNLDKAG 600
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 79.4 bits (187), Expect = 2e-15
Identities = 34/79 (43%), Positives = 48/79 (60%)
Frame = +1
Query: 271 HGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGR 450
HG Q+ RD L F E + +L+ TDVAARGLD+ GI YV+ +D P + +IHR+GR
Sbjct: 300 HGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIHRVGR 359
Query: 451 TGRSKSKGTSYAFFTPSNS 507
T R + +G + F P +
Sbjct: 360 TARMERQGRAIVFLMPKET 378
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 78.2 bits (184), Expect = 6e-15
Identities = 36/84 (42%), Positives = 54/84 (64%)
Frame = +1
Query: 253 LPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDY 432
L A +HG+ TQ +R + L F++ L+ATDVAARGLD+ G++ VIN+ P + Y
Sbjct: 437 LKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPREIDSY 496
Query: 433 IHRIGRTGRSKSKGTSYAFFTPSN 504
+HR+GRT R+ +G + F T S+
Sbjct: 497 VHRVGRTARAGREGYAVTFVTDSD 520
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 78.2 bits (184), Expect = 6e-15
Identities = 35/87 (40%), Positives = 53/87 (60%)
Frame = +1
Query: 244 EIWLPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSS 423
E+ + + MH +Q R L +FK G+ IL+ATDVA+RGLD+ + VIN+D P
Sbjct: 324 ELEVENIAMHSLNSQSMRLSALSKFKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDP 383
Query: 424 EDYIHRIGRTGRSKSKGTSYAFFTPSN 504
DY+HR+GRT R+ G + + T ++
Sbjct: 384 RDYVHRVGRTARAGRGGLAVSIITETD 410
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 75.8 bits (178), Expect = 3e-14
Identities = 32/73 (43%), Positives = 50/73 (68%)
Frame = +1
Query: 289 QERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKS 468
+ +++ + FK ++L+AT VAARGLDV ++ V+NFD PN EDY+HR+GRTGR+
Sbjct: 651 RSQEKSISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGR 710
Query: 469 KGTSYAFFTPSNS 507
KG + F + ++
Sbjct: 711 KGCAVTFISEDDA 723
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 74.5 bits (175), Expect = 7e-14
Identities = 33/94 (35%), Positives = 51/94 (54%)
Frame = +1
Query: 232 KEHQEIWLPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDY 411
K+ E+ +H Q R+ V ++F+ G LV TD+ RG+D+ + VINFD+
Sbjct: 379 KKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDF 438
Query: 412 PNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSLK 513
P +SE Y+HR+GR+GR G + T + K
Sbjct: 439 PRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFK 472
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 74.5 bits (175), Expect = 7e-14
Identities = 33/94 (35%), Positives = 51/94 (54%)
Frame = +1
Query: 232 KEHQEIWLPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDY 411
K+ E+ +H Q R+ V ++F+ G LV TD+ RG+D+ + VINFD+
Sbjct: 379 KKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDF 438
Query: 412 PNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSLK 513
P +SE Y+HR+GR+GR G + T + K
Sbjct: 439 PRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFK 472
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 74.5 bits (175), Expect = 7e-14
Identities = 35/99 (35%), Positives = 59/99 (59%)
Frame = +1
Query: 256 PAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYI 435
P+VC +GD Q R + +F+ + +L+ TD+AARG+D+ + VIN+D+P + ++
Sbjct: 298 PSVC-YGDMDQDARKIHVSRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPRPKIFV 356
Query: 436 HRIGRTGRSKSKGTSYAFFTPSNSLKPKIWYLFYKKLIR 552
HR+GR R+ G +Y+F TP + +LF K +R
Sbjct: 357 HRVGRAARAGRTGCAYSFVTPEDMPYMLDLHLFLSKPVR 395
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 73.7 bits (173), Expect = 1e-13
Identities = 33/94 (35%), Positives = 50/94 (53%)
Frame = +1
Query: 232 KEHQEIWLPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDY 411
K+ E+ +H Q R+ V + F+ G LV TD+ RG+D+ + VINFD+
Sbjct: 409 KKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDF 468
Query: 412 PNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSLK 513
P +SE Y+HR+GR+GR G + T + K
Sbjct: 469 PRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFK 502
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 72.9 bits (171), Expect = 2e-13
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Frame = +1
Query: 253 LPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVD-GIKYVINFDYPNSSED 429
+P +HG +Q++R V QF E R S+L TDV ARGLD D + +V+ D P
Sbjct: 343 IPLKSLHGKMSQEKRMGVYSQFIE-RQSVLFCTDVLARGLDFDKAVDWVVQVDCPEDVAS 401
Query: 430 YIHRIGRTGRSKSKGTSYAFFTPS 501
YIHR+GRT R ++G S F TPS
Sbjct: 402 YIHRVGRTARFYTQGKSLLFLTPS 425
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 72.9 bits (171), Expect = 2e-13
Identities = 33/77 (42%), Positives = 44/77 (57%)
Frame = +1
Query: 268 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 447
+HGD Q RD+ L F + + L+ TDVAARGLD+ GI YV+ +D P + HR G
Sbjct: 308 IHGDMKQNARDKALASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPPQDPNMFNHRAG 367
Query: 448 RTGRSKSKGTSYAFFTP 498
RT R +G + F P
Sbjct: 368 RTARLGRQGRAIVFLLP 384
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 72.9 bits (171), Expect = 2e-13
Identities = 30/77 (38%), Positives = 47/77 (61%)
Frame = +1
Query: 268 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 447
+HG Q++R FK + ++L++TDVAARGLD ++ +I +D P + +Y+HR+G
Sbjct: 379 LHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPGEATEYVHRVG 438
Query: 448 RTGRSKSKGTSYAFFTP 498
RT R KG + F P
Sbjct: 439 RTARIGEKGEALLFLQP 455
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 71.7 bits (168), Expect = 5e-13
Identities = 33/85 (38%), Positives = 52/85 (61%)
Frame = +1
Query: 268 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 447
+HG+ Q +R+ L F+ G+ + LVAT+VAARGLD++ ++ +I + P E YIHR G
Sbjct: 376 LHGEIPQSQREVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSG 435
Query: 448 RTGRSKSKGTSYAFFTPSNSLKPKI 522
RTGR+ + G + + S +I
Sbjct: 436 RTGRAGNTGVAVTLYDSRKSSVSRI 460
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 71.3 bits (167), Expect = 6e-13
Identities = 39/92 (42%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Frame = +1
Query: 205 NQEKS*EHIKEHQEIWLPAVCMHGDKTQQERDEVLYQFK--EGRASILVATDVAARGLDV 378
N ++ +H +I V HG+ ++R E L +FK EG LV TD+AARGLD+
Sbjct: 381 NSSRAVDHYLSENQI--STVNYHGEVPAEQRVENLKKFKDEEGDCPTLVCTDLAARGLDL 438
Query: 379 DGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 474
D + +V+ FD+P +S DY+HR GRT R +KG
Sbjct: 439 D-VDHVVMFDFPKNSIDYLHRTGRTARMGAKG 469
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 71.3 bits (167), Expect = 6e-13
Identities = 31/88 (35%), Positives = 48/88 (54%)
Frame = +1
Query: 232 KEHQEIWLPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDY 411
K+ E+ +H Q R+ V + F+ G LV TD+ RG+D+ + VINFD+
Sbjct: 386 KKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDF 445
Query: 412 PNSSEDYIHRIGRTGRSKSKGTSYAFFT 495
P ++E Y+HR+GR+GR G + T
Sbjct: 446 PKNAETYLHRVGRSGRFGHLGLAVNLIT 473
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 71.3 bits (167), Expect = 6e-13
Identities = 31/88 (35%), Positives = 48/88 (54%)
Frame = +1
Query: 232 KEHQEIWLPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDY 411
K+ E+ +H Q R+ V + F+ G LV TD+ RG+D+ + VINFD+
Sbjct: 386 KKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDF 445
Query: 412 PNSSEDYIHRIGRTGRSKSKGTSYAFFT 495
P ++E Y+HR+GR+GR G + T
Sbjct: 446 PKNAETYLHRVGRSGRFGHLGLAVNLIT 473
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 70.5 bits (165), Expect = 1e-12
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Frame = +1
Query: 268 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 447
+HG Q R + + F + + IL+ TDVAARGLD+ + ++I +D P+ +YIHR+G
Sbjct: 364 IHGGMDQNRRTKTFFDFMKAKKGILLCTDVAARGLDIPSVDWIIQYDPPDKPTEYIHRVG 423
Query: 448 RTGRSK-SKGTSYAFFTP 498
RT R + +KG + P
Sbjct: 424 RTARGEGAKGKALLVLIP 441
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 69.3 bits (162), Expect = 3e-12
Identities = 32/77 (41%), Positives = 49/77 (63%)
Frame = +1
Query: 259 AVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIH 438
A+ +HG+K +ER +V+ F G +LV+T V RG+D+ ++ VI FD P++ ++YIH
Sbjct: 385 ALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIH 444
Query: 439 RIGRTGRSKSKGTSYAF 489
IGR R KGT+ F
Sbjct: 445 VIGRASRMGEKGTAIVF 461
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 69.3 bits (162), Expect = 3e-12
Identities = 32/77 (41%), Positives = 49/77 (63%)
Frame = +1
Query: 259 AVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIH 438
A+ +HG+K +ER +V+ F G +LV+T V RG+D+ ++ VI FD P++ ++YIH
Sbjct: 248 ALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIH 307
Query: 439 RIGRTGRSKSKGTSYAF 489
IGR R KGT+ F
Sbjct: 308 VIGRASRMGEKGTAIVF 324
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 67.3 bits (157), Expect = 1e-11
Identities = 32/70 (45%), Positives = 41/70 (58%)
Frame = +1
Query: 268 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 447
MHGD + R VL +FK G +LV +++ARGLDV V+N + P + Y HR G
Sbjct: 437 MHGDLGKLGRSTVLKKFKNGEIKVLVTNELSARGLDVAECDLVVNLELPTDAVHYAHRAG 496
Query: 448 RTGRSKSKGT 477
RTGR KGT
Sbjct: 497 RTGRLGRKGT 506
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 66.9 bits (156), Expect = 1e-11
Identities = 30/77 (38%), Positives = 43/77 (55%)
Frame = +1
Query: 268 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 447
+H K Q R V +F++ +A ILV +DV+ARG+D + V+ P+ E YIHR+G
Sbjct: 670 IHSRKPQSYRTRVSDEFRKSKAIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLG 729
Query: 448 RTGRSKSKGTSYAFFTP 498
RTGR +G P
Sbjct: 730 RTGRKGKEGEGVLLLAP 746
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 66.9 bits (156), Expect = 1e-11
Identities = 30/85 (35%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Frame = +1
Query: 262 VC-MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIH 438
VC + + Q+ R + + +F+ IL+ATD+ ARG+D+ ++ +I++ P+S+E Y+H
Sbjct: 529 VCTLFSEMKQRARLKSIDRFRASENGILIATDLVARGIDIKNVRTIIHYKLPHSAEVYVH 588
Query: 439 RIGRTGRSKSKGTSYAFFTPSNSLK 513
R GRT R+ + G S A P+ + K
Sbjct: 589 RCGRTARAFADGCSIALIEPNETSK 613
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 66.5 bits (155), Expect = 2e-11
Identities = 31/78 (39%), Positives = 47/78 (60%)
Frame = +1
Query: 271 HGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGR 450
H + ER +L F+E + V TD AARG+DV + +VI D+ +S+ D++HRIGR
Sbjct: 455 HKNHKLDERANILADFRE-TGGVFVCTDAAARGVDVPNVSHVIQADFASSAVDFLHRIGR 513
Query: 451 TGRSKSKGTSYAFFTPSN 504
T R+ GT + +T +N
Sbjct: 514 TARAGQYGTVTSLYTEAN 531
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 66.1 bits (154), Expect = 2e-11
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Frame = +1
Query: 244 EIWLPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSS 423
E+ +HG+ T+ +RD+++ +FKE +L+ATDV ARG D + V+N++ P
Sbjct: 362 EMGYDVTSVHGNLTESDRDKIVKEFKECLTQVLIATDVIARGFDQQRVNLVVNYNLPTKY 421
Query: 424 ED-------YIHRIGRTGRSKSKGTSY 483
E Y+HR+GR GR KG +
Sbjct: 422 ETGEPDYEVYLHRVGRAGRFGRKGAVF 448
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 65.7 bits (153), Expect = 3e-11
Identities = 29/77 (37%), Positives = 43/77 (55%)
Frame = +1
Query: 268 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 447
+H K Q R V +F++ ++ ILV +DV+ARG+D + V+ P+ E YIHR+G
Sbjct: 368 IHSRKPQSYRTRVSDEFRKSKSIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLG 427
Query: 448 RTGRSKSKGTSYAFFTP 498
RTGR +G P
Sbjct: 428 RTGRKGKEGEGVLLLAP 444
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 64.9 bits (151), Expect = 6e-11
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Frame = +1
Query: 268 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 447
+ G Q +R QF + IL+ T+VAARGLD + +++ +D P++ DYIHR+G
Sbjct: 430 IRGGIDQNKRTPTFLQFIKAETGILLCTNVAARGLDFPHVDWIVQYDPPDNPTDYIHRVG 489
Query: 448 RTGRSK-SKGTSYAFFTP 498
RT R + +KG + TP
Sbjct: 490 RTARGEGAKGKALLVLTP 507
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 64.1 bits (149), Expect = 1e-10
Identities = 29/77 (37%), Positives = 41/77 (53%)
Frame = +1
Query: 268 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 447
+H K Q R V +F++ + ILV +DV+ARG+D + V+ P E YIHR+G
Sbjct: 342 IHSRKPQSYRTRVSNEFRKSKGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIHRLG 401
Query: 448 RTGRSKSKGTSYAFFTP 498
RTGR +G P
Sbjct: 402 RTGRKGKEGEGILLLAP 418
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 64.1 bits (149), Expect = 1e-10
Identities = 29/45 (64%), Positives = 35/45 (77%)
Frame = +1
Query: 256 PAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIK 390
PA+ +HGDKTQ ERD VL +FK GR+ I+ ATDVAARGL GI+
Sbjct: 436 PALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLVSSGIR 480
Score = 60.1 bits (139), Expect = 2e-09
Identities = 33/84 (39%), Positives = 51/84 (60%)
Frame = +2
Query: 2 KEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQEPG 181
+EV+ LA +L D + IGS L AN +I Q+++I EK N+L LL+++ G
Sbjct: 355 REVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQL----MDG 410
Query: 182 AKTIIFVETKRKAENISRNIRRYG 253
+K +IFVETKR + ++R +R G
Sbjct: 411 SKILIFVETKRGCDQVTRQLRMDG 434
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 63.7 bits (148), Expect = 1e-10
Identities = 29/79 (36%), Positives = 45/79 (56%)
Frame = +1
Query: 223 EHIKEHQEIWLPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVIN 402
E +K + L + + GD R L + ++G +LV+TD+AARG+D+ ++ N
Sbjct: 356 EFLKTSYKGSLEILLLEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFN 415
Query: 403 FDYPNSSEDYIHRIGRTGR 459
FD P + DY+HR GR GR
Sbjct: 416 FDLPQTVTDYLHRAGRAGR 434
>At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 315
Score = 63.7 bits (148), Expect = 1e-10
Identities = 29/79 (36%), Positives = 45/79 (56%)
Frame = +1
Query: 223 EHIKEHQEIWLPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVIN 402
E +K + L + + GD R L + ++G +LV+TD+AARG+D+ ++ N
Sbjct: 199 EFLKTSYKGSLEILLLEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFN 258
Query: 403 FDYPNSSEDYIHRIGRTGR 459
FD P + DY+HR GR GR
Sbjct: 259 FDLPQTVTDYLHRAGRAGR 277
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 63.7 bits (148), Expect = 1e-10
Identities = 31/77 (40%), Positives = 40/77 (51%)
Frame = +1
Query: 268 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 447
+H K Q R V +FKE ILV +DV+ARG++ + VI P+ E YIHR+G
Sbjct: 617 IHARKPQLHRTRVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLG 676
Query: 448 RTGRSKSKGTSYAFFTP 498
RTGR G P
Sbjct: 677 RTGREGKGGEGLLLIAP 693
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 62.1 bits (144), Expect = 4e-10
Identities = 31/77 (40%), Positives = 40/77 (51%)
Frame = +1
Query: 268 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 447
+H K Q R V +FKE ILV +DV+ARG++ + VI P+ E YIHR+G
Sbjct: 664 IHARKPQLHRTCVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIHRLG 723
Query: 448 RTGRSKSKGTSYAFFTP 498
RTGR G P
Sbjct: 724 RTGREGKGGKGLLLIAP 740
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 61.7 bits (143), Expect = 5e-10
Identities = 28/74 (37%), Positives = 42/74 (56%)
Frame = +1
Query: 274 GDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRT 453
G Q R + L F++G +LVA+D RG+DV G+ VIN+D P ++ +IHR GRT
Sbjct: 360 GGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTFIHRAGRT 419
Query: 454 GRSKSKGTSYAFFT 495
R+ G + +
Sbjct: 420 ARAGQAGRCFTLLS 433
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 58.0 bits (134), Expect = 6e-09
Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Frame = +1
Query: 163 TKSRTWCENNNFC*NQEKS*EHIKEHQEIWLPAVCMHGDKTQQERDEVLYQFK----EGR 330
+K+ +C C E + + + +E L + H +Q+ R + +F E
Sbjct: 636 SKTIIFCNKIETCRKVENIFKRV-DRKERQLHVLPFHAALSQESRLTNMQEFTSSQPEEN 694
Query: 331 ASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR-SKSKGTSYAF 489
+ LV TD A+RG+D G+ +V+ FD+P +Y+ R+GRT R ++ KG ++ F
Sbjct: 695 SLFLVCTDRASRGIDFSGVDHVVLFDFPRDPSEYVRRVGRTARGARGKGKAFIF 748
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 54.0 bits (124), Expect = 1e-07
Identities = 24/45 (53%), Positives = 30/45 (66%)
Frame = +1
Query: 364 RGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTP 498
RG+D + VINFD P S YIHRIGRTGR+ S G+S + +P
Sbjct: 398 RGIDFKKVHTVINFDMPQSVTGYIHRIGRTGRAYSSGSSVSLISP 442
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 48.0 bits (109), Expect = 7e-06
Identities = 21/42 (50%), Positives = 27/42 (64%)
Frame = +1
Query: 271 HGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYV 396
HG Q+ RD L F E + +L+ TDVAARGLD+ GI Y+
Sbjct: 273 HGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIVYI 314
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/81 (29%), Positives = 36/81 (44%)
Frame = +1
Query: 271 HGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGR 450
H ++R + F + ++VAT GLD + VI+F P S E+Y+ IGR
Sbjct: 517 HSGLPAKDRVRIQESFCSNKIRVVVATVAFGMGLDKGDVGAVIHFSVPGSMEEYVQEIGR 576
Query: 451 TGRSKSKGTSYAFFTPSNSLK 513
GR + F+ LK
Sbjct: 577 AGRDGRLSYCHLFYDNDTYLK 597
>At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative similar
to C-terminal half of transcription-repair coupling
factor (TRCF) GB:Q55750 [Synechocystis PCC6803];
contains Pfam profile: helicases conserved C-terminal
domain
Length = 823
Score = 45.6 bits (103), Expect = 4e-05
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = +1
Query: 271 HGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRI-G 447
HG + ++ +E + +F +G+ IL+ T++ GLD+ +I D ++++ G
Sbjct: 513 HGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRG 572
Query: 448 RTGRSKSKGTSYAFFTPSNSL 510
R GR+ + +Y F+ P SL
Sbjct: 573 RVGRADKEAHAYLFY-PDKSL 592
>At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low
similarity to RNA helicase/RNAseIII CAF protein
[Arabidopsis thaliana] GI:6102610; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1324
Score = 45.2 bits (102), Expect = 5e-05
Identities = 23/63 (36%), Positives = 37/63 (58%)
Frame = +1
Query: 280 KTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR 459
++Q+ + VL +F+ G +++VAT + GLD+ + VI FD S I R+GRTGR
Sbjct: 511 QSQKIQQAVLEKFRAGGFNVIVATSIGEEGLDIMEVDLVICFDANVSPLRMIQRMGRTGR 570
Query: 460 SKS 468
+
Sbjct: 571 KNN 573
>At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel
factory-related similar to RNA helicase GB:AAF03534
Length = 1317
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/64 (31%), Positives = 36/64 (56%)
Frame = +1
Query: 277 DKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTG 456
++T+++++E++ F+ G +I+VAT + GLDV VI FD ++ +I GR
Sbjct: 429 NQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPASNICSFIQSRGRAR 488
Query: 457 RSKS 468
S
Sbjct: 489 MQNS 492
>At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative
Length = 953
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +1
Query: 268 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRI- 444
+HG +++E L +F+ G IL++T V G+DV ++ + +H++
Sbjct: 802 LHGRMKSDDKEEALNKFRSGETQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLR 861
Query: 445 GRTGRSKSKGTSYAFFTPSNSLK 513
GR GR K + +NSLK
Sbjct: 862 GRVGRGTRKSKCLLVGSSTNSLK 884
>At4g35740.2 68417.m05073 DNA helicase (RECQl3) identical to DNA
Helicase [Arabidopsis thaliana] GI:11121447; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 620
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/82 (25%), Positives = 36/82 (43%)
Frame = +1
Query: 247 IWLPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSE 426
I + + H + R VL + + I+VAT G+D ++ V +F+ P S E
Sbjct: 186 IGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMGIDKKDVRMVCHFNIPKSME 245
Query: 427 DYIHRIGRTGRSKSKGTSYAFF 492
+ GR GR + S ++
Sbjct: 246 SFYQESGRAGRDQLPSRSVLYY 267
>At4g35740.1 68417.m05072 DNA helicase (RECQl3) identical to DNA
Helicase [Arabidopsis thaliana] GI:11121447; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 713
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/82 (25%), Positives = 36/82 (43%)
Frame = +1
Query: 247 IWLPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSE 426
I + + H + R VL + + I+VAT G+D ++ V +F+ P S E
Sbjct: 279 IGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMGIDKKDVRMVCHFNIPKSME 338
Query: 427 DYIHRIGRTGRSKSKGTSYAFF 492
+ GR GR + S ++
Sbjct: 339 SFYQESGRAGRDQLPSRSVLYY 360
>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar
to CAF protein [Arabidopsis thaliana] GI:6102610;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF03368:
Domain of unknown function, PF00636: RNase3 domain,
PF00035: Double-stranded RNA binding motif
Length = 1676
Score = 41.1 bits (92), Expect = 8e-04
Identities = 22/77 (28%), Positives = 39/77 (50%)
Frame = +1
Query: 283 TQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRS 462
+++ + +L +F+ ++LVAT V GLD+ VI +D P + +I GR+
Sbjct: 556 SRRSMETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPETVTSFIQ---SRGRA 612
Query: 463 KSKGTSYAFFTPSNSLK 513
+ + YAF S + K
Sbjct: 613 RMPQSEYAFLVDSGNEK 629
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 41.1 bits (92), Expect = 8e-04
Identities = 23/68 (33%), Positives = 37/68 (54%)
Frame = +1
Query: 280 KTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR 459
K+ Q +D + +F++G ++LVAT VA GLD+ V+ FD + YI GR
Sbjct: 708 KSSQMQDTIS-KFRDGHVTLLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQ---SRGR 763
Query: 460 SKSKGTSY 483
++ G+ Y
Sbjct: 764 ARKPGSDY 771
>At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative similar
to WRN (Werner syndrome) protein - Mus musculus,
EMBL:AF241636; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00627: UBA/TS-N domain
Length = 858
Score = 35.9 bits (79), Expect = 0.030
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = +1
Query: 247 IWLPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSE 426
+ L A + ++ +V F + + ++VAT G+D ++ +I++ + S E
Sbjct: 520 VGLKAAAYNASLPKKHLRQVHQDFHDNKLQVVVATIAFGMGIDKKNVRKIIHYGWLQSLE 579
Query: 427 DYIHRIGRTGR 459
Y GR GR
Sbjct: 580 AYYQEAGRAGR 590
>At5g10370.1 68418.m01203 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to RNA-dependent ATPase/helicase Cdc28p
[Schizosaccharomyces pombe] GI:1439562; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain, weak hit
to PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1775
Score = 35.5 bits (78), Expect = 0.039
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +1
Query: 259 AVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVIN 402
A+ +HG + +E+ V +Q GR ++ AT++A L + G+KYVI+
Sbjct: 551 ALPLHGKLSFEEQFRV-FQNHPGRRKVIFATNIAETSLTIPGVKYVID 597
>At4g01020.1 68417.m00137 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1787
Score = 35.5 bits (78), Expect = 0.039
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +1
Query: 259 AVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVIN 402
A+ +HG K E +++Q GR ++ AT++A L + G+KYVI+
Sbjct: 548 ALPLHG-KLSFEEQFMVFQNYPGRRKVIFATNIAETSLTIPGVKYVID 594
>At1g12700.1 68414.m01473 helicase domain-containing protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles PF01535: PPR repeat, PF00271:
Helicase conserved C-terminal domain
Length = 828
Score = 35.5 bits (78), Expect = 0.039
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = +1
Query: 268 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 447
++ D + R VL +FK +LV ++ GL+ +++ + P + Y HR G
Sbjct: 645 LNRDLRKLRRSSVLKKFKNRDVRVLVTNELLTWGLEDAECDLMVDLELPTDAVHYAHRAG 704
Query: 448 RTGRSKSKGT 477
R R K T
Sbjct: 705 RMRRPGRKMT 714
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 34.3 bits (75), Expect = 0.090
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +1
Query: 262 VCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHR 441
V H ++R +V +++ G I+ AT G+D +++VI+ + E Y
Sbjct: 456 VYYHAGVPAKQRVDVQRKWQTGEVRIVCATIAFGMGIDKADVRFVIHNTLSKAVESYYQE 515
Query: 442 IGRTGR 459
GR GR
Sbjct: 516 SGRAGR 521
>At2g35340.1 68415.m04333 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1110
Score = 32.7 bits (71), Expect = 0.28
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +1
Query: 322 EGRASILVATDVAARGLDVDGIKYVIN 402
EG +++AT++A L +DGIKYV++
Sbjct: 735 EGARKVVLATNIAETSLTIDGIKYVVD 761
>At1g32490.1 68414.m04009 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1044
Score = 32.7 bits (71), Expect = 0.28
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +1
Query: 322 EGRASILVATDVAARGLDVDGIKYVIN 402
EG +++AT++A L +DGIKYV++
Sbjct: 669 EGARKVVLATNIAETSLTIDGIKYVVD 695
>At4g16680.1 68417.m02519 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 883
Score = 31.9 bits (69), Expect = 0.48
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +1
Query: 322 EGRASILVATDVAARGLDVDGIKYVINFDY 411
+G +++AT++A L +DG+KYVI+ Y
Sbjct: 487 KGTRKVVLATNIAETSLTIDGVKYVIDPGY 516
>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1226
Score = 31.5 bits (68), Expect = 0.64
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 319 KEGRASILVATDVAARGLDVDGIKYVINFDY 411
++G +VAT++A L VDGI YVI+ Y
Sbjct: 797 EDGARKCIVATNIAETSLTVDGIYYVIDTGY 827
>At3g43920.1 68416.m04701 ribonuclease III family protein similar to
RNA helicase/RNAseIII CAF protein [Arabidopsis thaliana]
GI:6102610; contains Pfam profiles PF02170: PAZ domain,
PF00636: RNase3 domain
Length = 1531
Score = 31.5 bits (68), Expect = 0.64
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = +1
Query: 286 QQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSK 465
Q+ + E+ F+ G+ ++L TDV G V ++ FD P + Y +S
Sbjct: 407 QKMQIEIPDLFQHGKVNLLFITDVVEEGFQVPDCSCMVCFDLPKTMCSYSQSQKHAKQSN 466
Query: 466 SKGTSY 483
SK +
Sbjct: 467 SKSIMF 472
>At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative
similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain, PF00575: S1 RNA binding domain
Length = 1168
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +1
Query: 325 GRASILVATDVAARGLDVDGIKYVIN 402
G+ ++VAT++A L +DGI YV++
Sbjct: 781 GKRKVVVATNIAEASLTIDGIYYVVD 806
>At5g28237.2 68418.m03423 tryptophan synthase, beta subunit,
putative similar to SP|P14671 Tryptophan synthase beta
chain 1, chloroplast precursor (EC 4.2.1.20)
{Arabidopsis thaliana}; contains Pfam profile PF00291:
Pyridoxal-phosphate dependent enzyme
Length = 372
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 681 GQNCFRV*KSRHHLVHLRRICSCSTRRHH 595
GQ RV H + HL +C ST+RHH
Sbjct: 10 GQPLLRVPARNHRMTHLV-VCGVSTKRHH 37
>At5g28237.1 68418.m03422 tryptophan synthase, beta subunit,
putative similar to SP|P14671 Tryptophan synthase beta
chain 1, chloroplast precursor (EC 4.2.1.20)
{Arabidopsis thaliana}; contains Pfam profile PF00291:
Pyridoxal-phosphate dependent enzyme
Length = 465
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 681 GQNCFRV*KSRHHLVHLRRICSCSTRRHH 595
GQ RV H + HL +C ST+RHH
Sbjct: 10 GQPLLRVPARNHRMTHLV-VCGVSTKRHH 37
>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
putative ATP-dependent helicases
Length = 1058
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +1
Query: 274 GDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRT 453
G ++R ++ G+ + AT+ G+DV I ++ +P S + GR+
Sbjct: 611 GGYIAEDRRKIESDLFGGKLCGIAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRS 670
Query: 454 GRSK--SKGTSYAFFTP 498
GR + S AF P
Sbjct: 671 GRRQKPSLAVYVAFLGP 687
>At5g62170.1 68418.m07804 expressed protein various predicted
proteins, Arabidopsis thaliana
Length = 703
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +1
Query: 427 DYIHR-IGRTGRSKSKGTSYA-FFTPSNSLKPKIWY 528
+YI R + RTG + SYA +F+PS+ L P I+Y
Sbjct: 490 EYITRTLRRTGIDRDTPISYAKWFSPSHPLDPSIFY 525
>At4g02000.1 68417.m00269 expressed protein low similarity to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 314
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -2
Query: 633 LRRICSCSTRRHHHRNGRP 577
LRRICS R HHRN P
Sbjct: 121 LRRICSSCFRMTHHRNSCP 139
>At1g33390.1 68414.m04133 helicase domain-containing protein similar
to kurz protein [Drosophila melanogaster] GI:5869803;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1237
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +1
Query: 319 KEGRASILVATDVAARGLDVDGIKYVIN 402
KE R ++VAT+VA L + GIKYV++
Sbjct: 670 KEERL-VVVATNVAETSLTIPGIKYVVD 696
>At1g58050.1 68414.m06579 helicase domain-containing protein contains
similarity to SP|P24785 Dosage compensation regulator
(Male-less protein) (No action potential protein)
{Drosophila melanogaster}; contains Pfam profiles
PF04408: Helicase associated domain (HA2), PF00271:
Helicase conserved C-terminal domain
Length = 1417
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/45 (22%), Positives = 25/45 (55%)
Frame = +1
Query: 268 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVIN 402
+H E+ +V + +G +++AT++A + ++ + YVI+
Sbjct: 919 LHSSIASTEQKKVFLRPPKGIRKVIIATNIAETSITIEDVVYVID 963
>At1g26370.1 68414.m03217 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 717
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/60 (25%), Positives = 31/60 (51%)
Frame = +1
Query: 223 EHIKEHQEIWLPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVIN 402
++I E + LP ++Q+ +V G +++AT++A + + GI+YVI+
Sbjct: 316 QNIPEDKRKLLPLAIFSALPSEQQM-KVFAPAPTGFRKVILATNIAETSITIPGIRYVID 374
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,044,506
Number of Sequences: 28952
Number of extensions: 289770
Number of successful extensions: 965
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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