Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0168X.Seq
(441 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 29 0.42
SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.42
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 28 0.55
SPAC23H3.08c |bub3||mitotic spindle checkpoint protein Bub3|Schi... 27 1.7
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 27 1.7
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 27 1.7
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 26 3.0
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 26 3.0
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 3.0
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 26 3.0
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 26 3.0
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 26 3.0
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom... 26 3.0
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 25 3.9
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein... 25 3.9
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 25 6.8
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce... 25 6.8
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 25 6.8
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 25 6.8
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 24 9.0
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 28.7 bits (61), Expect = 0.42
Identities = 20/40 (50%), Positives = 24/40 (60%)
Frame = +2
Query: 257 GLTGQYLLRTELDNNDFXEIRXAVVGNVDAGKSTLLGVLT 376
GLTG+ L EL+ EI +VG +AGKSTLL LT
Sbjct: 221 GLTGEQKL-IELELKTICEI--GLVGLPNAGKSTLLNCLT 257
>SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 263
Score = 28.7 bits (61), Expect = 0.42
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = -1
Query: 255 LHTPTSSAQHMTLSHLPPMNEALLGT-HCIHPLLNPDHLLHVQYHK*SRHFQLQAFPIAV 79
L +P S H P + EA + PLL+P L +++HK S QL +
Sbjct: 62 LKSPVSPWDKNISQHSPWLLEAASNSIGDSSPLLSPISPLKLRFHKYSVSKQLNSVGKQG 121
Query: 78 YGVTHTHQHLDSPS 37
+G++ H SPS
Sbjct: 122 FGLSSNHSRYASPS 135
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 28.3 bits (60), Expect = 0.55
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +2
Query: 317 RXAVVGNVDAGKSTLLGVLTHGEL 388
R AV+G AGKSTL+ VLT GEL
Sbjct: 702 RIAVIGPNGAGKSTLIKVLT-GEL 724
>SPAC23H3.08c |bub3||mitotic spindle checkpoint protein
Bub3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 320
Score = 26.6 bits (56), Expect = 1.7
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +2
Query: 260 LTGQYLLRTELDNNDFXEIRXAVVGNVDAGKSTL-LGVLTHGELDN-GRG 403
L G+Y L + + + ++ + + A+VGN+D +TL L H L N G+G
Sbjct: 48 LLGKYDLSSPILSLEYTDEKTALVGNLDGTVTTLDLNTRNHEFLGNHGKG 97
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 26.6 bits (56), Expect = 1.7
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 314 IRXAVVGNVDAGKSTLLG 367
+ V G+VD+GKST+LG
Sbjct: 178 VHLVVTGHVDSGKSTMLG 195
>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 26.6 bits (56), Expect = 1.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 314 IRXAVVGNVDAGKSTLLGVLTHGELDNGRGY 406
++ +VG + GKSTL +LT L N Y
Sbjct: 46 LKIGIVGMPNIGKSTLFQILTKTNLGNPANY 76
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 25.8 bits (54), Expect = 3.0
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -1
Query: 267 PVSPLHTPTSSAQHMTLSHLPPMNEALLGTHCIHPLLNPDHLLHVQ 130
P+ + PT+SA + S P + + TH +PL P H Q
Sbjct: 18 PLRQMSQPTTSAPSNSASSTPYSPQQVPLTHNSYPLSTPSSFQHGQ 63
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 25.8 bits (54), Expect = 3.0
Identities = 20/92 (21%), Positives = 41/92 (44%)
Frame = -1
Query: 399 RPLSSSPCVRTPSSVDLPASTLPTTAXXXXXXXXXXXXXLRRYWPVSPLHTPTSSAQHMT 220
RP+ SP ++ P+ ++LP ++ +T+ R P + L T +
Sbjct: 347 RPVEPSPSIQPPNLLNLPTASPESTSWLPGSQTNIPANTNRSERPFTQLMTFHGLP---S 403
Query: 219 LSHLPPMNEALLGTHCIHPLLNPDHLLHVQYH 124
L+ LP + E++ + LLN + + H ++
Sbjct: 404 LADLPAVLESMFRPSGNNNLLNLNGIFHPDHN 435
>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 368
Score = 25.8 bits (54), Expect = 3.0
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -1
Query: 264 VSPLHTPTSSAQHMTLSHLPPMNEALLGTHCIHP 163
VS H P+S TLS P LLGT P
Sbjct: 83 VSMSHVPSSGLLKSTLSSTPTAGSNLLGTSPAEP 116
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 25.8 bits (54), Expect = 3.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 314 IRXAVVGNVDAGKSTLLGVLTH 379
I V+G+VD+GKST G L +
Sbjct: 8 INVVVIGHVDSGKSTTTGHLIY 29
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 25.8 bits (54), Expect = 3.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 314 IRXAVVGNVDAGKSTLLGVLTH 379
I V+G+VD+GKST G L +
Sbjct: 8 INVVVIGHVDSGKSTTTGHLIY 29
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 25.8 bits (54), Expect = 3.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 314 IRXAVVGNVDAGKSTLLGVLTH 379
I V+G+VD+GKST G L +
Sbjct: 8 INVVVIGHVDSGKSTTTGHLIY 29
>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 25.8 bits (54), Expect = 3.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 111 GEIIYDIGHGEDGRGLTEDEYNASLATLHSLVAS 212
G ++Y+IG E+ D+Y SL T+ + AS
Sbjct: 104 GVLLYEIGELEEHMVDRYDQYRVSLKTIRDIEAS 137
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 25.4 bits (53), Expect = 3.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 317 RXAVVGNVDAGKSTLLGVLT 376
R A+VG GKSTLL ++T
Sbjct: 418 RVAIVGKNGTGKSTLLNLIT 437
>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 758
Score = 25.4 bits (53), Expect = 3.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 326 VVGNVDAGKSTLLGVLTHGEL 388
+ G+++AGKSTL L H ++
Sbjct: 159 ITGDLNAGKSTLCNALVHKDI 179
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 24.6 bits (51), Expect = 6.8
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 123 YDIGHGEDGRGLTEDEYNASLATLHSLV 206
+DI G G+ + D++NA+L LHS++
Sbjct: 383 FDINTGS-GQYMPIDQWNAALTELHSIL 409
>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 24.6 bits (51), Expect = 6.8
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 156 LTEDEYNASLATLHSLVASERVSCVELRRWE 248
LT+DE + LA SLV S+++ ++ +WE
Sbjct: 23 LTQDE--SRLALFESLVQSDQLLVEKIEKWE 51
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 24.6 bits (51), Expect = 6.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 314 IRXAVVGNVDAGKSTLLG 367
+ +G+VDAGKSTL G
Sbjct: 239 VNIVFIGHVDAGKSTLGG 256
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 24.6 bits (51), Expect = 6.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 355 GLASVHVTHNSXSNLXKVIIVKLRPKEVLAGE 260
GLA + + S + +VI + RP E+L GE
Sbjct: 419 GLARFNTSSKSANYTNRVITLWFRPPELLLGE 450
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 24.2 bits (50), Expect = 9.0
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Frame = +1
Query: 343 RWQVHA---ARCPHARRTGQRSRVCTTYAVPPQTR 438
+W+ H+ A+C RRT S+ C A P +R
Sbjct: 487 KWEEHSRQFAKCRRCRRTKYCSKECQHQAWPGHSR 521
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,846,931
Number of Sequences: 5004
Number of extensions: 35614
Number of successful extensions: 144
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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