Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0168X.Seq
(441 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 31 0.31
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 31 0.31
09_06_0365 - 22582467-22583524,22584407-22584641,22585474-225856... 31 0.54
08_02_1614 - 28243532-28244589,28245149-28245383,28245524-282457... 31 0.54
04_04_1439 + 33614112-33614123,33614278-33615649,33615705-33616141 29 1.7
03_04_0206 - 18493178-18495310 28 3.8
09_02_0565 + 10710770-10711003,10711368-10711527,10712277-107124... 27 5.1
02_05_1104 + 34146610-34146614,34147108-34147231,34147480-341475... 27 5.1
02_05_1101 + 34122061-34122065,34122559-34122682,34122931-341229... 27 5.1
12_02_0691 - 22195142-22196197 27 8.8
12_02_0457 + 19239816-19241319,19241337-19241632,19241729-192418... 27 8.8
04_01_0567 - 7263744-7263922,7264020-7264259,7264919-7264982,726... 27 8.8
03_06_0408 - 33722741-33722893,33723174-33723350,33723798-337239... 27 8.8
03_05_0990 - 29503950-29504462,29504567-29504686,29514956-295150... 27 8.8
01_01_0545 - 4002659-4003307,4003415-4003887 27 8.8
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 31.5 bits (68), Expect = 0.31
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +2
Query: 311 EIRXAVVGNVDAGKSTLLGVLTH 379
++ A+VG+VD+GKSTL G L H
Sbjct: 247 QLNLAIVGHVDSGKSTLSGRLLH 269
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 31.5 bits (68), Expect = 0.31
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +2
Query: 311 EIRXAVVGNVDAGKSTLLGVLTH 379
++ A+VG+VD+GKSTL G L H
Sbjct: 247 QLNLAIVGHVDSGKSTLSGRLLH 269
>09_06_0365 -
22582467-22583524,22584407-22584641,22585474-22585684,
22585775-22585848,22585943-22586092
Length = 575
Score = 30.7 bits (66), Expect = 0.54
Identities = 26/65 (40%), Positives = 32/65 (49%)
Frame = +2
Query: 242 VGVWSGLTGQYLLRTELDNNDFXEIRXAVVGNVDAGKSTLLGVLTHGELDNGRGYARHML 421
V V G T L+ LD + R A+VG AGKSTLL ++T G+L G R
Sbjct: 363 VEVTFGYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMT-GDLIPLDGMVR--- 418
Query: 422 FRHKH 436
RH H
Sbjct: 419 -RHNH 422
>08_02_1614 -
28243532-28244589,28245149-28245383,28245524-28245734,
28245834-28245907,28246465-28246665
Length = 592
Score = 30.7 bits (66), Expect = 0.54
Identities = 26/65 (40%), Positives = 32/65 (49%)
Frame = +2
Query: 242 VGVWSGLTGQYLLRTELDNNDFXEIRXAVVGNVDAGKSTLLGVLTHGELDNGRGYARHML 421
V V G T L+ LD + R A+VG AGKSTLL ++T G+L G R
Sbjct: 380 VEVSFGYTPDNLIYKNLDFGVDLDSRIALVGPNGAGKSTLLKLMT-GDLAPLDGMVR--- 435
Query: 422 FRHKH 436
RH H
Sbjct: 436 -RHNH 439
>04_04_1439 + 33614112-33614123,33614278-33615649,33615705-33616141
Length = 606
Score = 29.1 bits (62), Expect = 1.7
Identities = 19/32 (59%), Positives = 20/32 (62%)
Frame = +2
Query: 317 RXAVVGNVDAGKSTLLGVLTHGELDNGRGYAR 412
R AVVG AGKSTLL +L GEL G AR
Sbjct: 403 RVAVVGPNGAGKSTLLKLLA-GELTPTSGEAR 433
>03_04_0206 - 18493178-18495310
Length = 710
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 317 RXAVVGNVDAGKSTLLGVLTHGELDNGRGYAR 412
R A+VG AGKSTLL +L G+L +G R
Sbjct: 512 RVAIVGPNGAGKSTLLNLLA-GDLTPTKGEVR 542
>09_02_0565 +
10710770-10711003,10711368-10711527,10712277-10712477,
10712564-10712628,10712740-10712767,10712847-10712923,
10713023-10713109,10713572-10713622,10713857-10713937,
10714125-10714346,10714424-10714517,10714608-10714748,
10716383-10716444,10716519-10717106
Length = 696
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 34 W*W*VQMLMSMSYSVNSYWKGLKLEMARSFMILDMEKMVGV 156
W W + +L M + WK LK+ ++SF + ++ V V
Sbjct: 293 WYWILNLLQLMFLFIPKKWKPLKITYSKSFTLYGIKIPVSV 333
>02_05_1104 +
34146610-34146614,34147108-34147231,34147480-34147514,
34149924-34150269
Length = 169
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 159 TEDEYNASLATLHSLVASERVSCVELRRWECGVGS 263
T Y A++ S ++CVE +RW CG G+
Sbjct: 23 TIGSYTATITECTSGPPLFSLACVEKKRWNCGSGA 57
>02_05_1101 +
34122061-34122065,34122559-34122682,34122931-34122965,
34125375-34125720
Length = 169
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 159 TEDEYNASLATLHSLVASERVSCVELRRWECGVGS 263
T Y A++ S ++CVE +RW CG G+
Sbjct: 23 TIGSYTATITECTSGPPLFSLACVEKKRWNCGSGA 57
>12_02_0691 - 22195142-22196197
Length = 351
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 338 VDAGKSTLLGVLTHGELDNGRGYARHMLFR 427
+DAG + LLG + GE+ R +H ++R
Sbjct: 282 MDAGAAVLLGRVIAGEITMARETGKHSIYR 311
>12_02_0457 +
19239816-19241319,19241337-19241632,19241729-19241829,
19241939-19242029,19242158-19242268,19242360-19242425,
19242457-19242462
Length = 724
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 326 VVGNVDAGKSTLLGVLTHGELDNG 397
++G+VDAGK+ LL + H + G
Sbjct: 451 ILGHVDAGKTKLLDCIRHTNVQKG 474
>04_01_0567 -
7263744-7263922,7264020-7264259,7264919-7264982,
7265088-7265393,7265652-7265866,7266195-7266489,
7266596-7266655,7267091-7267717,7268510-7268596,
7269292-7269612,7270051-7270224,7272806-7275022
Length = 1594
Score = 26.6 bits (56), Expect = 8.8
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 323 AVVGNVDAGKSTLLGVLTHGELDNGRG 403
AVVG V +GKS+LL + GE+D G
Sbjct: 713 AVVGTVGSGKSSLLSCIM-GEMDKVSG 738
>03_06_0408 -
33722741-33722893,33723174-33723350,33723798-33723947,
33724085-33724145,33724338-33724558
Length = 253
Score = 26.6 bits (56), Expect = 8.8
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 311 EIRXAVVGNVDAGKSTLLGVLTHGEL-DNGRGYAR 412
++R AV+G+ GKS+L+ + G D G AR
Sbjct: 14 DVRVAVIGDHGTGKSSLVATIATGRFPDQDDGVAR 48
>03_05_0990 -
29503950-29504462,29504567-29504686,29514956-29515012,
29515635-29515689,29515765-29515845,29515928-29515983,
29516112-29516256,29516347-29516415,29517355-29517467,
29517619-29517708,29518112-29518176,29519256-29519667
Length = 591
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 314 IRXAVVGNVDAGKSTLLGVLTHGEL 388
+ AVVG +AGKSTL+ L+ +L
Sbjct: 288 VTVAVVGYTNAGKSTLVSALSETDL 312
>01_01_0545 - 4002659-4003307,4003415-4003887
Length = 373
Score = 26.6 bits (56), Expect = 8.8
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +3
Query: 129 IGHGEDGRGLTEDEYNASLATLHSLVASERVSCVELRRWECGVGSPANTS 278
+GHG L+ E +A + SL ASE++ V CG GSP +S
Sbjct: 74 VGHGVPAALLSRVEER--VARVFSLPASEKMRAVRGPGEPCGYGSPPISS 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,154,989
Number of Sequences: 37544
Number of extensions: 280532
Number of successful extensions: 922
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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