Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0168X.Seq
         (441 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)                 105   2e-23
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              74   6e-14
SB_53056| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.32 
SB_35310| Best HMM Match : Cadherin (HMM E-Value=5.9e-23)              30   0.74 
SB_12874| Best HMM Match : Endotoxin_N (HMM E-Value=3.5)               29   1.3  
SB_27093| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_38739| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.0  
SB_50008| Best HMM Match : SRP19 (HMM E-Value=4.6)                     28   3.0  
SB_43507| Best HMM Match : DUF35 (HMM E-Value=7.6)                     28   3.9  
SB_36385| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_48962| Best HMM Match : Cadherin (HMM E-Value=0)                    27   5.2  
SB_55679| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.2  
SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)            27   5.2  
SB_33579| Best HMM Match : Laminin_G_2 (HMM E-Value=3.2e-34)           27   5.2  
SB_48651| Best HMM Match : ABC_tran (HMM E-Value=2.1e-24)              27   6.9  
SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0)               27   6.9  
SB_37456| Best HMM Match : DJ-1_PfpI (HMM E-Value=3)                   27   9.1  
SB_8773| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.1  

>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
          Length = 347

 Score =  105 bits (251), Expect = 2e-23
 Identities = 47/61 (77%), Positives = 51/61 (83%)
 Frame = +2

Query: 257 GLTGQYLLRTELDNNDFXEIRXAVVGNVDAGKSTLLGVLTHGELDNGRGYARHMLFRHKH 436
           G  G+YL+R  +D NDF E+R AVVGNVDAGKSTLLGVLTHGELDNGRG AR  LFRHKH
Sbjct: 211 GTVGEYLVRVRMDENDFMEVRVAVVGNVDAGKSTLLGVLTHGELDNGRGTARQRLFRHKH 270

Query: 437 E 439
           E
Sbjct: 271 E 271



 Score = 34.7 bits (76), Expect = 0.034
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +3

Query: 30  KMVMVSPNADXXXXXXXXXXXXXXAGNGEIIYDIGHGE-DGRGLTEDEYNASLATLHSLV 206
           ++ +VSP+                 G+GE IY++G G+    GL  ++ +AS+ATL +L 
Sbjct: 134 RLALVSPDELGFDVLLSRLKQRLSIGHGETIYEVGVGDGTSSGLDPEDLHASVATLKTLA 193

Query: 207 ASERVSCVELRRWECGVGS 263
            +     + LR     +G+
Sbjct: 194 EACNADAMLLREKTAELGT 212


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 73.7 bits (173), Expect = 6e-14
 Identities = 35/57 (61%), Positives = 44/57 (77%)
 Frame = +2

Query: 269 QYLLRTELDNNDFXEIRXAVVGNVDAGKSTLLGVLTHGELDNGRGYARHMLFRHKHE 439
           + L+R   D+  F +IR AV+GNV++GKSTLLGVLT+ ELDNG+G AR  LFRH HE
Sbjct: 98  EVLVRQVPDDQQFTDIRMAVLGNVESGKSTLLGVLTYDELDNGQGRARLNLFRHLHE 154


>SB_53056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 31.5 bits (68), Expect = 0.32
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
 Frame = +2

Query: 149 SGFNRG*IQCVPSNASFIGGK---*ESVMC*AEEVGVWSGLTGQYLLRTELDNNDFXEIR 319
           + F  G ++C  SN+SF+  K       +C   EV   S +     L+  + NN   E+ 
Sbjct: 23  ANFQLGPLECFGSNSSFLTDKATQPSKQVCKPSEVSAQSPMQVVAPLQESMHNNSLEELY 82

Query: 320 XAVVGNVDAGKSTLLGVLTHGELDN 394
              + ++DA  +    + T  +L N
Sbjct: 83  KKYIKSLDAEDTHFKSISTSAQLQN 107


>SB_35310| Best HMM Match : Cadherin (HMM E-Value=5.9e-23)
          Length = 1250

 Score = 30.3 bits (65), Expect = 0.74
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = +3

Query: 330 WVTWTLASPRCS--VSSRTENWTTVEGMHDICCSATN 434
           W  W+  S  CS  V+SRT   TTVE     C  A N
Sbjct: 18  WSPWSQCSTNCSIGVTSRTRTKTTVESNGGTCTYALN 54


>SB_12874| Best HMM Match : Endotoxin_N (HMM E-Value=3.5)
          Length = 200

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +3

Query: 279 LGRSLTIMTXWRLEXLLWVTWTLASPRCSVSSRTENWTTV 398
           L  +L     WR    LWV  TL S    V+  TENW T+
Sbjct: 60  LPHALNSTRNWR--KALWVCLTLGSAAALVTQLTENWETL 97


>SB_27093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 683

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 19/44 (43%), Positives = 29/44 (65%)
 Frame = +2

Query: 284 TELDNNDFXEIRXAVVGNVDAGKSTLLGVLTHGELDNGRGYARH 415
           +++D +   E R AVVG+  +GK+TLL +L  GEL+  +G  RH
Sbjct: 355 SKVDISANNESRIAVVGDNGSGKTTLLKILL-GELEPVKG-IRH 396


>SB_38739| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 213

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 423 NSICRAYPRPLSS-SPCVRTPSSVDLPASTLPTT 325
           N+  R   RPLS  SPC R+P+   + ++T  TT
Sbjct: 170 NAALREVSRPLSPVSPCSRSPAQTTIVSTTRKTT 203


>SB_50008| Best HMM Match : SRP19 (HMM E-Value=4.6)
          Length = 338

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 436 VFVAEQHMSCIPSTVVQFSVREDTEQRGLASVHVT 332
           VF A +H   +PS VV+     D EQ  L  +H T
Sbjct: 196 VFAAARHQYWVPSYVVRGKDSRDFEQDTLLRIHTT 230


>SB_43507| Best HMM Match : DUF35 (HMM E-Value=7.6)
          Length = 326

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 433 FVAEQHMSCIPSTVVQFSVREDTEQRGLASVHVTHNSXSNLXKVI 299
           F   ++ +C PS   Q ++R   ++  L S  VTHNS   + K I
Sbjct: 9   FFRHENQACPPSQSNQGNLRLPQKKSELVSCLVTHNSPEAVRKAI 53


>SB_36385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +2

Query: 323 AVVGNVDAGKSTLLGVLTHGELDNGRG 403
           AVVG V  GKSTLL  L  GE +  +G
Sbjct: 307 AVVGQVGCGKSTLLSALL-GETEKTKG 332


>SB_48962| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2225

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 114 EIIYDIGHGEDGRGLTEDEYNASLATLHSLVASER 218
           +I Y+I  G  G   T D Y   +   HSL   E+
Sbjct: 96  QITYNIASGNHGNKFTIDRYGGFITVAHSLDREEK 130


>SB_55679| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -1

Query: 276 RYWPV-SPLHTPTSSAQHMTLSHLPPMNEALLGTHCIHPLLNPDHLLHVQYH 124
           +Y P+  P+H  T+     ++S +PP+  +    +  HPLL+P HL  + Y+
Sbjct: 54  QYHPLLHPVHLSTTPYYIQSIS-VPPLTTSSPSQY--HPLLHPVHLSTIPYY 102


>SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)
          Length = 416

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 65  ILISIWTHHHHLPSNTGII 9
           I+I I  HHHH PS++ II
Sbjct: 242 IIIIIIIHHHHHPSSSSII 260


>SB_33579| Best HMM Match : Laminin_G_2 (HMM E-Value=3.2e-34)
          Length = 1071

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
 Frame = +2

Query: 149 SGFNRG*IQCVPSNASFIGGK---*ESVMC*AEEVGVWSGLTGQYLLRTELDNNDFXEIR 319
           + F  G ++C  SN+SF+  K       +C   EV   + +     L+  + NN   E+ 
Sbjct: 605 ANFQLGPLECFGSNSSFLTDKATQPSKQVCKPSEVSAQNPMQVVAPLQESMHNNSLEELY 664

Query: 320 XAVVGNVDAGKSTLLGVLT 376
              + ++DA  + L  + T
Sbjct: 665 KKYIKSLDAEDTHLKSIST 683


>SB_48651| Best HMM Match : ABC_tran (HMM E-Value=2.1e-24)
          Length = 569

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +2

Query: 290 LDNNDFXEIRXAVVGNVDAGKSTLLGVLTHGEL 388
           +DN+ F     A+VG V AGKS+LL  +  GEL
Sbjct: 148 IDNSYFKGELLAIVGPVGAGKSSLLMAIL-GEL 179


>SB_37595| Best HMM Match : Ribosomal_S11 (HMM E-Value=0)
          Length = 543

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +3

Query: 288 SLTIMTXWRLEXLLWVTWTLASPRCSVSSRTENWTTVEGMHDIC 419
           ++T ++ WR   +LW+T  ++     V++ T       GM + C
Sbjct: 30  TITQISSWRCAQILWLTGNVSVMHAPVAALTAKRRKPMGMRETC 73


>SB_37456| Best HMM Match : DJ-1_PfpI (HMM E-Value=3)
          Length = 232

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 376 ARRTGQRSRVCTTYAVP 426
           AR TG R RVC T A+P
Sbjct: 50  ARGTGARRRVCNTAAIP 66


>SB_8773| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 376 ARRTGQRSRVCTTYAVP 426
           AR TG R RVC T A+P
Sbjct: 242 ARGTGARRRVCNTAAIP 258


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,382,336
Number of Sequences: 59808
Number of extensions: 292949
Number of successful extensions: 872
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)