Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0168X.Seq
(441 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 82 2e-16
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 82 2e-16
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 60 5e-10
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 33 0.12
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 33 0.12
AC006762-5|AAF60553.2| 684|Caenorhabditis elegans Hypothetical ... 28 2.6
Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical p... 27 4.6
Z68215-11|CAH60786.1| 1301|Caenorhabditis elegans Hypothetical p... 27 4.6
Z68215-6|CAB54213.2| 1304|Caenorhabditis elegans Hypothetical pr... 27 4.6
Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical pr... 27 4.6
Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical pr... 27 4.6
U39996-6|AAA81092.1| 595|Caenorhabditis elegans Hypothetical pr... 27 4.6
U20555-1|AAC46918.1| 839|Caenorhabditis elegans zinc finger pro... 27 4.6
U13645-7|AAA20989.2| 598|Caenorhabditis elegans Hypothetical pr... 27 4.6
L23645-6|AAO91714.1| 635|Caenorhabditis elegans Zinc finger pro... 27 4.6
L23645-4|AAK26137.1| 867|Caenorhabditis elegans Zinc finger pro... 27 4.6
AL132943-6|CAC14393.1| 511|Caenorhabditis elegans Hypothetical ... 27 6.0
AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical ... 27 8.0
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 82.2 bits (194), Expect = 2e-16
Identities = 41/68 (60%), Positives = 47/68 (69%)
Frame = +2
Query: 236 EEVGVWSGLTGQYLLRTELDNNDFXEIRXAVVGNVDAGKSTLLGVLTHGELDNGRGYARH 415
++ G S T +++R DF E R AVVGNVDAGKSTLLGVLTH LD+GRG AR
Sbjct: 115 KQTGGGSLFTEVWIIRDPPTEKDFIEARVAVVGNVDAGKSTLLGVLTHSALDDGRGAART 174
Query: 416 MLFRHKHE 439
LFRHKHE
Sbjct: 175 KLFRHKHE 182
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 82.2 bits (194), Expect = 2e-16
Identities = 41/68 (60%), Positives = 47/68 (69%)
Frame = +2
Query: 236 EEVGVWSGLTGQYLLRTELDNNDFXEIRXAVVGNVDAGKSTLLGVLTHGELDNGRGYARH 415
++ G S T +++R DF E R AVVGNVDAGKSTLLGVLTH LD+GRG AR
Sbjct: 115 KQTGGGSLFTEVWIIRDPPTEKDFIEARVAVVGNVDAGKSTLLGVLTHSALDDGRGAART 174
Query: 416 MLFRHKHE 439
LFRHKHE
Sbjct: 175 KLFRHKHE 182
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 60.5 bits (140), Expect = 5e-10
Identities = 30/57 (52%), Positives = 37/57 (64%)
Frame = +2
Query: 269 QYLLRTELDNNDFXEIRXAVVGNVDAGKSTLLGVLTHGELDNGRGYARHMLFRHKHE 439
+ L+R ++ F E+R AVVG D GKSTL GVLT G LD+G G AR +FR HE
Sbjct: 154 EVLVRKVPESQQFIEVRLAVVGGCDVGKSTLCGVLTQGCLDDGNGKARIGIFRFPHE 210
Score = 40.3 bits (90), Expect = 6e-04
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = +3
Query: 3 ETDYSSIRGKMVMVSPNADXXXXXXXXXXXXXXAGNGEIIYDIGHGEDG--RGLTEDEYN 176
ET+ +I K +V+P G GE IY+IG + G GLT++E N
Sbjct: 57 ETELGNIEYKAKLVNPTTSRIQHLITQMKWRLREGQGEAIYEIGVEDGGIMSGLTDEELN 116
Query: 177 ASLATLHSLVASERVSCVEL 236
SL TL ++ + S V L
Sbjct: 117 DSLRTLRTMAQALGASMVIL 136
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 32.7 bits (71), Expect = 0.12
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +2
Query: 314 IRXAVVGNVDAGKSTLLGVLTH 379
I VVG+VDAGKSTL+G L H
Sbjct: 171 INLIVVGHVDAGKSTLMGHLLH 192
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 32.7 bits (71), Expect = 0.12
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +2
Query: 314 IRXAVVGNVDAGKSTLLGVLTH 379
I VVG+VDAGKSTL+G L H
Sbjct: 189 INLIVVGHVDAGKSTLMGHLLH 210
>AC006762-5|AAF60553.2| 684|Caenorhabditis elegans Hypothetical
protein Y42G9A.6a protein.
Length = 684
Score = 28.3 bits (60), Expect = 2.6
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 323 AVVGNVDAGKSTLLGVLTHGELDN 394
A++G AGK+TLL VLT L N
Sbjct: 96 AIIGPSGAGKTTLLNVLTKRNLSN 119
>Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical
protein C53B4.4e protein.
Length = 1544
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 138 GEDGRGLTEDEYNASLATLHSLVASERVSCVELRRW 245
GEDG+G+++ E S++ L ++ E LRRW
Sbjct: 193 GEDGQGISKWESCNSISLLLHMLFQEHKDTRALRRW 228
>Z68215-11|CAH60786.1| 1301|Caenorhabditis elegans Hypothetical
protein C53B4.4d protein.
Length = 1301
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 138 GEDGRGLTEDEYNASLATLHSLVASERVSCVELRRW 245
GEDG+G+++ E S++ L ++ E LRRW
Sbjct: 58 GEDGQGISKWESCNSISLLLHMLFQEHKDTRALRRW 93
>Z68215-6|CAB54213.2| 1304|Caenorhabditis elegans Hypothetical
protein C53B4.4c protein.
Length = 1304
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 138 GEDGRGLTEDEYNASLATLHSLVASERVSCVELRRW 245
GEDG+G+++ E S++ L ++ E LRRW
Sbjct: 58 GEDGQGISKWESCNSISLLLHMLFQEHKDTRALRRW 93
>Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical
protein C53B4.4b protein.
Length = 1586
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 138 GEDGRGLTEDEYNASLATLHSLVASERVSCVELRRW 245
GEDG+G+++ E S++ L ++ E LRRW
Sbjct: 193 GEDGQGISKWESCNSISLLLHMLFQEHKDTRALRRW 228
>Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical
protein C53B4.4a protein.
Length = 1584
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 138 GEDGRGLTEDEYNASLATLHSLVASERVSCVELRRW 245
GEDG+G+++ E S++ L ++ E LRRW
Sbjct: 193 GEDGQGISKWESCNSISLLLHMLFQEHKDTRALRRW 228
>U39996-6|AAA81092.1| 595|Caenorhabditis elegans Hypothetical
protein C56E6.5 protein.
Length = 595
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 323 AVVGNVDAGKSTLLGVLTHG 382
A+VG D+GK+TLL LT G
Sbjct: 51 AIVGVADSGKTTLLEALTSG 70
>U20555-1|AAC46918.1| 839|Caenorhabditis elegans zinc finger
protein protein.
Length = 839
Score = 27.5 bits (58), Expect = 4.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 216 SHLPPMNEALLGTHCIHPL 160
S LPP +E +GTHC+ L
Sbjct: 337 STLPPSSETTVGTHCLQQL 355
>U13645-7|AAA20989.2| 598|Caenorhabditis elegans Hypothetical
protein C05D10.3 protein.
Length = 598
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 323 AVVGNVDAGKSTLLGVLTHGELDN 394
A++G+ AGK+TL+ VLT L N
Sbjct: 24 AILGSSGAGKTTLMNVLTSRNLTN 47
>L23645-6|AAO91714.1| 635|Caenorhabditis elegans Zinc finger
protein protein 1,isoform c protein.
Length = 635
Score = 27.5 bits (58), Expect = 4.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 216 SHLPPMNEALLGTHCIHPL 160
S LPP +E +GTHC+ L
Sbjct: 105 STLPPSSETTVGTHCLQQL 123
>L23645-4|AAK26137.1| 867|Caenorhabditis elegans Zinc finger
protein protein 1,isoform a protein.
Length = 867
Score = 27.5 bits (58), Expect = 4.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 216 SHLPPMNEALLGTHCIHPL 160
S LPP +E +GTHC+ L
Sbjct: 337 STLPPSSETTVGTHCLQQL 355
>AL132943-6|CAC14393.1| 511|Caenorhabditis elegans Hypothetical
protein Y116F11B.11 protein.
Length = 511
Score = 27.1 bits (57), Expect = 6.0
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +1
Query: 55 LMSMSYSVNSYWKGLKLEMARSFMILDMEKMVGV*QRMNTMRP*QRFIHW 204
L S+SYS +S K + + + +LDME + + + ++T+ P + W
Sbjct: 348 LNSLSYSQSSSIKNIVSSLRNVYNLLDMEAPINLLKNVDTIVPAKLKSQW 397
>AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical
protein Y76B12C.2 protein.
Length = 1119
Score = 26.6 bits (56), Expect = 8.0
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +3
Query: 330 WVTWTLASPRCSVSSRTENWTTVEGMHDI 416
WV WTL P + +S + W ++ D+
Sbjct: 798 WVAWTLFLPPFAANSERKKWEMMQMREDL 826
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,402,089
Number of Sequences: 27780
Number of extensions: 207676
Number of successful extensions: 580
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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