Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0168X.Seq
         (441 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    26   0.21 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    26   0.21 
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    25   0.49 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   1.5  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   3.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   6.0  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   7.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   7.9  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 25.8 bits (54), Expect = 0.21
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 314 IRXAVVGNVDAGKSTLLGVLTH 379
           I   V+G+VD+GKST  G L +
Sbjct: 8   INIVVIGHVDSGKSTTTGHLIY 29


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 25.8 bits (54), Expect = 0.21
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 314 IRXAVVGNVDAGKSTLLGVLTH 379
           I   V+G+VD+GKST  G L +
Sbjct: 8   INIVVIGHVDSGKSTTTGHLIY 29


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 24.6 bits (51), Expect = 0.49
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 261 SPLHTPTSSAQHMTLSHLP 205
           SP HTP     H  L H+P
Sbjct: 327 SPYHTPEPDCIHELLGHMP 345


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 326 VVGNVDAGKSTLLGVL 373
           ++G+VD GK+TLL  L
Sbjct: 150 IMGHVDHGKTTLLDAL 165


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = -2

Query: 434 VCGGTAYVVHTLDRCP 387
           +CG    + HT+  CP
Sbjct: 77  ICGACGDIAHTVKYCP 92


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 108 NGEIIYDIGHGEDGRGLTEDEYNAS 182
           N   +Y +G  E+G  L    Y+AS
Sbjct: 2   NESAVYLLGSEEEGNQLNRSFYSAS 26


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 326 VVGNVDAGKSTLLGVLTHGELD 391
           V+GN+  G    + V  +G+LD
Sbjct: 360 VLGNIVQGNGDSVNVQLYGQLD 381


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 326 VVGNVDAGKSTLLGVLTHGELD 391
           V+GN+  G    + V  +G+LD
Sbjct: 360 VLGNIVQGNGDSVNVQLYGQLD 381


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,646
Number of Sequences: 438
Number of extensions: 2547
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)