Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0168X.Seq
(441 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60790.1 68418.m07627 ABC transporter family protein similar ... 37 0.007
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 32 0.20
At2g43970.2 68415.m05468 La domain-containing protein contains P... 31 0.46
At2g43970.1 68415.m05467 La domain-containing protein contains P... 31 0.46
At4g26250.1 68417.m03778 galactinol synthase, putative similar t... 28 2.4
At1g69550.1 68414.m07998 disease resistance protein (TIR-NBS cla... 28 2.4
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ... 28 3.2
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 27 4.2
At5g39930.1 68418.m04842 expressed protein ; expression supporte... 27 5.6
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ... 27 5.6
At3g56600.1 68416.m06294 phosphatidylinositol 3- and 4-kinase fa... 27 5.6
At5g54190.1 68418.m06747 protochlorophyllide reductase A, chloro... 27 7.4
At3g49730.1 68416.m05437 pentatricopeptide (PPR) repeat-containi... 27 7.4
At1g65130.1 68414.m07384 ubiquitin carboxyl-terminal hydrolase-r... 27 7.4
At5g39960.1 68418.m04846 GTP-binding family protein contains Pfa... 26 9.8
At4g38170.1 68417.m05389 far-red impaired responsive protein, pu... 26 9.8
>At5g60790.1 68418.m07627 ABC transporter family protein similar to
ABC transporter homolog PnATH GI:7573600 from [Populus
nigra]
Length = 595
Score = 36.7 bits (81), Expect = 0.007
Identities = 27/65 (41%), Positives = 33/65 (50%)
Frame = +2
Query: 242 VGVWSGLTGQYLLRTELDNNDFXEIRXAVVGNVDAGKSTLLGVLTHGELDNGRGYARHML 421
V V G T YL+ +D + R A+VG AGKSTLL ++T GEL G R
Sbjct: 383 VEVSFGYTPDYLIYKNIDFGVDLDSRVALVGPNGAGKSTLLKLMT-GELHPTEGMVR--- 438
Query: 422 FRHKH 436
RH H
Sbjct: 439 -RHNH 442
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 31.9 bits (69), Expect = 0.20
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +2
Query: 293 DNNDFXEIRXAVVGNVDAGKSTLLGVLTH 379
+++ ++ A+VG+VD+GKSTL G L H
Sbjct: 233 ESDALSQLNLAIVGHVDSGKSTLSGRLLH 261
>At2g43970.2 68415.m05468 La domain-containing protein contains Pfam
profile PF05383: La domain
Length = 529
Score = 30.7 bits (66), Expect = 0.46
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Frame = -1
Query: 246 PTSSAQHMTLSHLPPMNEALLGTHCIHPLL------NPDHLLHVQYHK*SRHFQLQAFPI 85
P HM H PP N +LG I P L +P H H Q+H +RH Q P+
Sbjct: 77 PPHGMLHM-YHHQPPFNTPVLGPVPIQPHLVPVQNHHPHHRFH-QHHHHNRHQNQQYVPV 134
Query: 84 AVYG 73
+G
Sbjct: 135 RNHG 138
>At2g43970.1 68415.m05467 La domain-containing protein contains Pfam
profile PF05383: La domain
Length = 545
Score = 30.7 bits (66), Expect = 0.46
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Frame = -1
Query: 246 PTSSAQHMTLSHLPPMNEALLGTHCIHPLL------NPDHLLHVQYHK*SRHFQLQAFPI 85
P HM H PP N +LG I P L +P H H Q+H +RH Q P+
Sbjct: 77 PPHGMLHM-YHHQPPFNTPVLGPVPIQPHLVPVQNHHPHHRFH-QHHHHNRHQNQQYVPV 134
Query: 84 AVYG 73
+G
Sbjct: 135 RNHG 138
>At4g26250.1 68417.m03778 galactinol synthase, putative similar to
galactinol synthase, isoform GolS-1 [Ajuga reptans]
GI:5608497; contains Pfam profile: PF01501 glycosyl
transferase family 8
Length = 336
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -2
Query: 155 TPTIFSMSNIINDLAISSFKPFQ*LFTE*LILISIWTHHHHL 30
TPT F+ + +N+ +KP + L++ +W H H+
Sbjct: 212 TPTYFAEQDFLNEYFTDIYKPIPSTYN--LVMAMLWRHPEHI 251
>At1g69550.1 68414.m07998 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 703
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 261 SPLHTPTSSAQHMTLSHLPPMNEALLGTHCIHPLLNPD 148
SP T +SS H + S PP + + GTH + P D
Sbjct: 52 SPPSTLSSSTSHPSSSTSPPSSLSCTGTHHVFPSFRGD 89
>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similiar to rab11 binding
protein (GI:4512103) [Bos taurus]
Length = 903
Score = 27.9 bits (59), Expect = 3.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 190 RFIHWWQVRECHVLS*GGGSVEWAH 264
R IH W+V+EC ++S GS+ H
Sbjct: 426 RVIHVWEVQECELMSMNEGSLTPIH 450
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 27.5 bits (58), Expect = 4.2
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -1
Query: 75 GVTHTHQHLDSPSPSSL 25
G +H HL+SPSPSSL
Sbjct: 496 GGSHAANHLESPSPSSL 512
>At5g39930.1 68418.m04842 expressed protein ; expression supported
by MPSS
Length = 423
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 317 RXAVVGNVDAGKSTLLGVLTHGELDNG 397
R +VG++D+GKSTL +L + + +G
Sbjct: 115 RVIIVGDIDSGKSTLAKMLLNWAVKDG 141
>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); rab11 binding protein, Bos
taurus, EMBL:AF117897
Length = 905
Score = 27.1 bits (57), Expect = 5.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 196 IHWWQVRECHVLS*GGGSVEWAH 264
IH W+V+EC ++S GS+ H
Sbjct: 435 IHVWEVQECEIMSMNEGSLTPIH 457
>At3g56600.1 68416.m06294 phosphatidylinositol 3- and 4-kinase
family protein low similarity to 55 kDa type II
phosphatidylinositol 4-kinase [Rattus norvegicus]
GI:13660755; contains Pfam profile PF00454:
Phosphatidylinositol 3- and 4-kinase
Length = 533
Score = 27.1 bits (57), Expect = 5.6
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +2
Query: 173 QCVPSNASFIGGK*ESVMC*AEEVGVWSGLTGQYLLRTELDNN 301
Q VP+ S + +++ A+ + + SGL G YLL+TE NN
Sbjct: 82 QRVPTVRSLVAEVTIAIVSGAQPLLLPSGLGGAYLLQTEKGNN 124
>At5g54190.1 68418.m06747 protochlorophyllide reductase A,
chloroplast / PCR A / NADPH-protochlorophyllide
oxidoreductase A (PORA) identical to SP:Q42536
protochlorophyllide reductase A, chloroplast precursor
(EC 1.3.1.33) (PCR A) (NADPH-protochlorophyllide
oxidoreductase A) (POR A) [Arabidopsis thaliana]
Length = 405
Score = 26.6 bits (56), Expect = 7.4
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 275 LLRTELDNNDFXEIRXAVVGNVDAGKSTLLG-VLTHGELDNGRGYA 409
LL +L N+D+ R +VG++ +TL G V L + RG A
Sbjct: 212 LLIDDLKNSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLA 257
>At3g49730.1 68416.m05437 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1184
Score = 26.6 bits (56), Expect = 7.4
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 323 AVVGNVDAGKSTLLGVLT 376
AVVG +AGKSTL+ LT
Sbjct: 913 AVVGYTNAGKSTLISALT 930
>At1g65130.1 68414.m07384 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1086
Score = 26.6 bits (56), Expect = 7.4
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = +1
Query: 76 VNSYWKGLKLEMARSFMILDMEKMVGV*QRM 168
+ S+W+GL E R+F+ +++ K++ + M
Sbjct: 175 LRSFWRGLDDEFKRNFLKMEITKLISFVEAM 205
>At5g39960.1 68418.m04846 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 616
Score = 26.2 bits (55), Expect = 9.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 278 LRTELDNNDFXEIRXAVVGNVDAGKSTLLGVLTHGE 385
L E+D + ++ A+VG + GKSTLL L E
Sbjct: 302 LSDEIDESKLP-LQLAIVGKPNVGKSTLLNALLEEE 336
>At4g38170.1 68417.m05389 far-red impaired responsive protein,
putative / SWIM zinc finger family protein similar to
far-red impaired response protein [Arabidopsis thaliana]
GI:5764395; contains Pfam profile PF04434: SWIM zinc
finger
Length = 545
Score = 26.2 bits (55), Expect = 9.8
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 429 WRNSICRAYPRPLSSSPCVRTPSSVDLPASTLPTTA 322
WR +A +S+P ++TPS ++ A++L T A
Sbjct: 269 WREKELKADYEATNSTPVMKTPSPMEKQAASLYTRA 304
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,026,888
Number of Sequences: 28952
Number of extensions: 203039
Number of successful extensions: 732
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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