Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0167.Seq
         (787 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21051| Best HMM Match : Abhydro_lipase (HMM E-Value=1.8e-33)        89   3e-18
SB_53067| Best HMM Match : No HMM Matches (HMM E-Value=.)              75   5e-14
SB_51512| Best HMM Match : Abhydro_lipase (HMM E-Value=9.8e-06)        61   9e-10
SB_25531| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   3e-05
SB_39408| Best HMM Match : Cadherin (HMM E-Value=0)                    30   1.8  
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_49462| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_49365| Best HMM Match : ABC_tran (HMM E-Value=3.5e-38)              28   7.5  
SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.5  
SB_4269| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.5  
SB_49174| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_49063| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_35600| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_33866| Best HMM Match : NOGCT (HMM E-Value=6.8)                     28   9.9  
SB_29711| Best HMM Match : Peptidase_C1 (HMM E-Value=6.9e-06)          28   9.9  
SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_3437| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.9  

>SB_21051| Best HMM Match : Abhydro_lipase (HMM E-Value=1.8e-33)
          Length = 991

 Score = 89.4 bits (212), Expect = 3e-18
 Identities = 43/90 (47%), Positives = 56/90 (62%), Gaps = 4/90 (4%)
 Frame = +2

Query: 248 ARVITRRGYRCETHSLI-SQGYVLNIHRIPQARSG---GDTPSNTVILQHGLFASSADWV 415
           +++I  RGY  E H +  S G++LN+ RIP  R+    G      V LQHGL   S +WV
Sbjct: 109 SQLIRNRGYPVEEHYVTTSDGFILNLQRIPHGRNELREGSGRKPVVFLQHGLLMDSTNWV 168

Query: 416 LNGPGKSLAFVLADAGYDVWMPNIRGNRYS 505
           LN P  SL ++LAD G+DVW+ NIRGN YS
Sbjct: 169 LNSPHDSLGYILADKGFDVWLGNIRGNEYS 198



 Score = 61.3 bits (142), Expect = 9e-10
 Identities = 25/82 (30%), Positives = 49/82 (59%)
 Frame = +1

Query: 511 HTTLKSSSTQYWNFSWHEVAQHDIPAIIDYIRERKGSDTKIAYMGHSMGSTMLFAMLALR 690
           H      S+++W+++W ++AQ+D+PA+IDY+     S +++ Y+GHS G+ + F   +  
Sbjct: 201 HVKWNKDSSKFWDWTWQQMAQYDLPAMIDYV-TLATSQSQVFYVGHSQGTLIGFTGFSAN 259

Query: 691 PEYNAVLRAGLALGPVVYLSHI 756
            E    ++   AL PV  ++H+
Sbjct: 260 QELAKKIKMFFALAPVYTVAHV 281


>SB_53067| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 668

 Score = 75.4 bits (177), Expect = 5e-14
 Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
 Frame = +2

Query: 251 RVITRRGYRCETHSLISQ-GYVLNIHRIPQARSG---GDTPSNTVILQHGLFASSADWVL 418
           ++I   GY  E + + ++ GY+L++ RIP  R G   G      V LQHGL  S+ +WV 
Sbjct: 300 QLIQYNGYPVEDYDVTTEDGYILSVQRIPYGREGKCKGVKDKPVVFLQHGLLCSATNWVT 359

Query: 419 NGPGKSLAFVLADAGYDVWMPNIRGNRYSR 508
           N   +S  F+LAD  +DVW+ N+RGN Y +
Sbjct: 360 NLYNESFGFILADQCFDVWLGNVRGNTYGK 389



 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 29/84 (34%), Positives = 48/84 (57%)
 Frame = +1

Query: 505 EEHTTLKSSSTQYWNFSWHEVAQHDIPAIIDYIRERKGSDTKIAYMGHSMGSTMLFAMLA 684
           + H  L   S  +W+FS+ E+A++D+PA+ID++ +  G    + Y GHS G+ + F   A
Sbjct: 389 KRHVKLPVDSDAFWDFSFDEMAKYDLPAMIDFVTKTTG-QASLYYAGHSQGTMIGFIAFA 447

Query: 685 LRPEYNAVLRAGLALGPVVYLSHI 756
             P     ++A  AL PV  +SH+
Sbjct: 448 HNPAVIQKVKAFYALAPVSTVSHM 471


>SB_51512| Best HMM Match : Abhydro_lipase (HMM E-Value=9.8e-06)
          Length = 226

 Score = 61.3 bits (142), Expect = 9e-10
 Identities = 29/64 (45%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
 Frame = +2

Query: 326 RIPQARSG---GDTPSNTVILQHGLFASSADWVLNGPGKSLAFVLADAGYDVWMPNIRGN 496
           RIP  R G   G      V LQHGL  S+ +WV N   +S  F+LAD  +DVW+ N+RGN
Sbjct: 3   RIPYGRKGKCKGVKDKPVVFLQHGLLCSATNWVTNLYNESFGFILADQCFDVWLGNVRGN 62

Query: 497 RYSR 508
            Y +
Sbjct: 63  TYGK 66



 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 29/84 (34%), Positives = 48/84 (57%)
 Frame = +1

Query: 505 EEHTTLKSSSTQYWNFSWHEVAQHDIPAIIDYIRERKGSDTKIAYMGHSMGSTMLFAMLA 684
           + H  L   S  +W+FS+ E+A++D+PA+ID++ +  G    + Y GHS G+ + F   A
Sbjct: 66  KRHVKLPVDSDAFWDFSFDEMAKYDLPAMIDFVTKTTG-QASLYYAGHSQGTMIGFIAFA 124

Query: 685 LRPEYNAVLRAGLALGPVVYLSHI 756
             P     ++A  AL PV  +SH+
Sbjct: 125 HNPAVIQKVKAFYALAPVSTVSHM 148


>SB_25531| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 23/65 (35%), Positives = 38/65 (58%)
 Frame = +1

Query: 562 EVAQHDIPAIIDYIRERKGSDTKIAYMGHSMGSTMLFAMLALRPEYNAVLRAGLALGPVV 741
           E+A++D+PA+ID++ +  G    + Y GHS G+ + F   A  P     ++A  AL PV 
Sbjct: 4   EMAKYDLPAMIDFVTKTTGQ-ASLYYAGHSQGTMIGFIAFAHNPAVIQKVKAFYALAPVS 62

Query: 742 YLSHI 756
            +SH+
Sbjct: 63  TVSHM 67


>SB_39408| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2389

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
 Frame = +2

Query: 242 ERARVITRRGYRCETHSLISQGYVLNIHRIPQARSGGDTPSNTVILQHGL----FASSAD 409
           + A  I+   YR   +      Y    H + Q      T  NTV +  G+     ASS D
Sbjct: 591 KNAEHISNISYRASFYEFEKTDYFWITHPLKQDPDQVSTTGNTVNMSSGIPQYGHASSGD 650

Query: 410 WVLNGPGKSLAFVLA 454
           W  +   K+L ++++
Sbjct: 651 WYFDNSSKALTYLVS 665


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +3

Query: 423  GLENP*PSCWRTPATTSGCQT*EVTDIRGAHHFKEQFDSILEFL 554
            GL++P   CW     T G Q     + R A  + E  D I EFL
Sbjct: 2396 GLDSPTAPCWGGYFCTQGAQVPNPENDRRAKDYTEYSDFIFEFL 2439


>SB_49462| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 659

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -2

Query: 756 DMRQVDDGAEREPRPQHRVVLRPQRQHREQ-HRGTHRVAHVRDLCVRALP 610
           D+  +DD  + E R QH  V     +HR + H   H V ++R +  R+LP
Sbjct: 478 DIPHLDDDFD-EFRQQHDKVYEDDSEHRRRKHIFRHNVRYIRSMNRRSLP 526


>SB_49365| Best HMM Match : ABC_tran (HMM E-Value=3.5e-38)
          Length = 283

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +1

Query: 376 TSARLVCELCRLGPERAWKI 435
           TS + V E CRLGPE A++I
Sbjct: 21  TSVQWVMEYCRLGPEPAYQI 40


>SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1256

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 110  VVTSVFEVIDEASRASEQIEPLDGD 36
            +VTS+  VI+ ASR++  I P D D
Sbjct: 1141 IVTSLLSVIEAASRSNSNIPPPDSD 1165


>SB_4269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 160

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -2

Query: 747 QVDDGAEREPRPQH-RVVLRPQRQHREQHRGTHRVAHVRDLCVRALP 610
           Q  D  + E R QH +V     + HR +H   H V ++R +  R+LP
Sbjct: 35  QSHDPVDDEFREQHDKVYEDDSKHHRLKHIFRHNVRYIRSMNRRSLP 81


>SB_49174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 744 VDDGAEREPRPQHRVVLRPQRQHREQ-HRGTHRVAHVRDLCVRALP 610
           VDD  + E R QH  V     +HR + H   H V ++R +  R+LP
Sbjct: 40  VDDDFD-EFRQQHDKVYEDDSEHRRRKHIFRHNVRYIRSMNRRSLP 84


>SB_49063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 226

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 744 VDDGAEREPRPQHRVVLRPQRQHREQ-HRGTHRVAHVRDLCVRALP 610
           VDD  + E R QH  V     +HR + H   H V ++R +  R+LP
Sbjct: 60  VDDDFD-EFRQQHDKVCEDDSEHRRRKHIFRHNVRYIRSMNRRSLP 104


>SB_35600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 744 VDDGAEREPRPQHRVVLRPQRQHREQ-HRGTHRVAHVRDLCVRALP 610
           VDD  + E R QH  V     +HR + H   H V ++R +  R+LP
Sbjct: 139 VDDDFD-EFRQQHDKVYEDDSEHRRRKHIFRHNVRYIRSMNRRSLP 183


>SB_33866| Best HMM Match : NOGCT (HMM E-Value=6.8)
          Length = 234

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 744 VDDGAEREPRPQHRVVLRPQRQHREQ-HRGTHRVAHVRDLCVRALP 610
           VDD  + E R QH  V     +HR + H   H V ++R +  R+LP
Sbjct: 40  VDDDFD-EFRQQHDKVYEDDSEHRRRKHIFRHNVRYIRSMKRRSLP 84


>SB_29711| Best HMM Match : Peptidase_C1 (HMM E-Value=6.9e-06)
          Length = 385

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 744 VDDGAEREPRPQHRVVLRPQRQHREQ-HRGTHRVAHVRDLCVRALP 610
           VDD  + E R QH  V     +HR + H   H V ++R +  R+LP
Sbjct: 40  VDDDFD-EFRQQHDKVYEDDSEHRRRKHIFRHNVRYIRSMNRRSLP 84


>SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1512

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 744  VDDGAEREPRPQHRVVLRPQRQHREQ-HRGTHRVAHVRDLCVRALP 610
            VDD  + E R QH  V     +HR + H   H V ++R +  R+LP
Sbjct: 1190 VDDDFD-EFRQQHDKVYEDDSEHRRRKHIFRHNVRYIRSMNRRSLP 1234


>SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1252

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = +3

Query: 105  NYIETQKDKVIEEWSSYMEDIKLSSSWTNFLEDKENPSLED 227
            N  +T+++K++++W+   E +    S T+FLE + N + E+
Sbjct: 1196 NNKKTEREKLLKQWNKAKESLAYWVSKTSFLEYQLNQNGEE 1236


>SB_3437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 741 DDGAEREPRPQHRVVLRPQRQHREQ 667
           D  A   PRP H+   +PQ Q ++Q
Sbjct: 132 DQAARPRPRPSHKTKTKPQDQDKQQ 156


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,557,702
Number of Sequences: 59808
Number of extensions: 453884
Number of successful extensions: 1260
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)