Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0167.Seq
         (787 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   3.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   4.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.8  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 180 SWTNFLEDKENPSLEDPDVVLS 245
           SW N +++  N +  DP ++L+
Sbjct: 270 SWRNLMDEHSNRTNSDPRMILT 291


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 373 DTSARLVCELCRLG 414
           DT+ R+VC+ C +G
Sbjct: 349 DTTYRVVCDACSMG 362


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +3

Query: 66  SSRSLVNNFEDARNYIETQKDKVIEEWSSYMEDIKLSSSWTNFLEDKEN 212
           S+R   N  E+A     T+  K   +W  Y E  K        L++KEN
Sbjct: 473 STRPKSNTVENACVLKNTEIFKDKSDWFDYSEVSKWVQKGQICLKEKEN 521


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,392
Number of Sequences: 438
Number of extensions: 4396
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)