Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0166.Seq
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    27   0.97 
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    25   5.2  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   5.2  
SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo...    25   6.8  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   6.8  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    24   9.0  

>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 27.5 bits (58), Expect = 0.97
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +2

Query: 41  SPSARTTNNNRM*FPFNNSATFIFTEANFLFTSKLLKEM-VIYDNVFYQNSGRRFIQRT* 217
           +PSA  + N+ +    +N +++    + FLF  +L K +   Y   F+     +F+  T 
Sbjct: 198 NPSAAESTNSHVSLDASNFSSYAENSSKFLFLQELFKNLSPSYSKTFFLFISNQFLANTL 257

Query: 218 T 220
           T
Sbjct: 258 T 258


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 130 QEVSLREYKRRRIVKWELHSVIICGPR 50
           ++  L ++ R+ IV  E +SVII GPR
Sbjct: 558 EQTKLYQWVRQTIVLGEGNSVIIVGPR 584


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -3

Query: 178 KNIIVNYHFFQQLTSKQEVSLREYKRRRIVKWELHS 71
           ++I+ N  F    ++  EVSL +   +++V W + S
Sbjct: 433 RSILTNRDFITSFSAVAEVSLSQISIKKLVTWLMSS 468


>SPBC1711.13 |his2||histidinol dehydrogenase His2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 300 HGMRSGFILLNATLAKNVFDR 362
           HG+ S  ILL  +L+  +FDR
Sbjct: 269 HGLDSQIILLTVSLSPEMFDR 289


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 157  HFFQQLTSKQEVSLREYKRRRIVKWELHSVII 62
            +F++Q  SK     R   RRR++ W   SV +
Sbjct: 2163 NFYRQCPSKIPAFYRSLFRRRLIMWFFISVFL 2194


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 409 PGPTLFMFHSFLLTLRLSNTFFASVAFSKIKPLRI 305
           P   +FM+ S++LT    N+      +S    LRI
Sbjct: 308 PASAIFMYGSYILTSHPDNSLILQRLYSTNNELRI 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,834,732
Number of Sequences: 5004
Number of extensions: 35519
Number of successful extensions: 76
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)