Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0166.Seq
         (441 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0725 - 31247066-31247158,31247499-31247528,31247688-312477...    27   5.1  
12_02_1044 - 25649296-25649730                                         27   6.7  
03_03_0025 + 13848450-13849420,13850921-13851131,13851327-138514...    27   8.8  

>02_05_0725 -
           31247066-31247158,31247499-31247528,31247688-31247736,
           31247781-31247980,31248128-31248241,31248353-31248489,
           31248597-31248707,31249608-31249860,31249959-31250025,
           31250058-31250113,31250324-31250560
          Length = 448

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 397 LFMFHSFLLTLRLSNTFFASVAFSKIKPLRI 305
           L+M + F +  R+ +TFF    FS + P+++
Sbjct: 333 LYMTYDFFIARRIISTFFTFFFFSVLLPMKV 363


>12_02_1044 - 25649296-25649730
          Length = 144

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 413 GTGPNVVYVSLVPPDTASIEHIFRQCGVQ*DKAASH 306
           G G ++    ++PP  AS  H   +CGV+ D A+++
Sbjct: 97  GGGVSLSVAEVMPPVKASRAHGCTECGVEFDSASTY 132


>03_03_0025 +
           13848450-13849420,13850921-13851131,13851327-13851459,
           13851576-13851832
          Length = 523

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 284 RWPILAWNAKRL 319
           RWPI  WNA+RL
Sbjct: 306 RWPIKRWNARRL 317


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,305,869
Number of Sequences: 37544
Number of extensions: 203235
Number of successful extensions: 378
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)