Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0166.Seq
         (441 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49936-3|CAD90174.1| 1000|Caenorhabditis elegans Hypothetical pr...    30   0.86 
AY834227-1|AAV91313.1|  984|Caenorhabditis elegans Toll and inte...    30   0.86 
AF022974-7|AAC48042.2|  293|Caenorhabditis elegans Serpentine re...    27   4.6  

>Z49936-3|CAD90174.1| 1000|Caenorhabditis elegans Hypothetical
          protein F13B10.1c protein.
          Length = 1000

 Score = 29.9 bits (64), Expect = 0.86
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 17 PSRNFPRHSPSARTTNNNRM*FPFNNS 97
          P+R  PR SPS ++ NNN   FP   S
Sbjct: 3  PNRKPPRPSPSFQSLNNNNQRFPLRRS 29


>AY834227-1|AAV91313.1|  984|Caenorhabditis elegans Toll and
          interleukin 1 receptordomain protein isoform c protein.
          Length = 984

 Score = 29.9 bits (64), Expect = 0.86
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 17 PSRNFPRHSPSARTTNNNRM*FPFNNS 97
          P+R  PR SPS ++ NNN   FP   S
Sbjct: 3  PNRKPPRPSPSFQSLNNNNQRFPLRRS 29


>AF022974-7|AAC48042.2|  293|Caenorhabditis elegans Serpentine
           receptor, class sx protein9 protein.
          Length = 293

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -3

Query: 397 LFMFHSFLLTLRLSNTFFASVAFSK 323
           ++M +SFL++L  SNTF+ ++  SK
Sbjct: 240 IYMHNSFLMSLSYSNTFYVTLWKSK 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,985,223
Number of Sequences: 27780
Number of extensions: 188366
Number of successful extensions: 417
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)