Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0166.Seq
         (441 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61740.1 68418.m07747 ABC transporter family protein ABC fami...    27   7.4  
At1g04650.1 68414.m00462 hypothetical protein                          27   7.4  

>At5g61740.1 68418.m07747 ABC transporter family protein ABC family
           transporter, Entamoeba histolytica, TREMBL:EH058
          Length = 848

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 394 FMFHSFLLTLRLSNTFFASVAFSKIK 317
           F+F+   + L++S  F AS  FSK+K
Sbjct: 345 FIFYFIFVNLQISFAFLASSIFSKVK 370


>At1g04650.1 68414.m00462 hypothetical protein
          Length = 936

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -3

Query: 175 NIIVNYHFFQQLTSKQEVSLREYKRRRIVKWELHSVIICGPRAWAMSRKVTTWF 14
           N   N+H      SK E+S  +   + I  WEL+ +++   R WA+     T F
Sbjct: 724 NSETNHHHNHLRLSKYEMSETKKCPKSIAVWELYHMLL-RKRHWALVHHAVTAF 776


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,279,517
Number of Sequences: 28952
Number of extensions: 170960
Number of successful extensions: 366
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)