Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0165.Seq
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr 2|...    71   2e-13
SPCC16A11.10c |oca8||cytochrome b5 |Schizosaccharomyces pombe|ch...    68   1e-12
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces...    38   0.001
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    33   0.045
SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces p...    29   0.96 
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    28   1.3  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    28   1.7  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    26   6.8  

>SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 70.5 bits (165), Expect = 2e-13
 Identities = 32/87 (36%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
 Frame = +1

Query: 4   MSVHKYTRAEVAARDNNKQNLIIIDNVVYDVAAFLEDHPGGTEVLVDNAGSDASECFHEV 183
           MSV  +   E+   +N+K   ++I+  VYDV+ F +DHPGG ++++D AG DA++ + ++
Sbjct: 1   MSVKYFEPEEIVEHNNSKDMYMVINGKVYDVSNFADDHPGGLDIMLDYAGQDATKAYQDI 60

Query: 184 GHSEIAIEWRNTFKVGEIV--DEEKLK 258
           GHS  A E      +G++    EE+LK
Sbjct: 61  GHSIAADELLEEMYIGDLKPGTEERLK 87


>SPCC16A11.10c |oca8||cytochrome b5 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 129

 Score = 68.1 bits (159), Expect = 1e-12
 Identities = 35/79 (44%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
 Frame = +1

Query: 16  KYTRAEVAARDNNKQNL-IIIDNVVYDVAAFLEDHPGGTEVLVDNAGSDASECFHEVGHS 192
           K    E   + N + +L I++ + VYD++ FL+ HPGG EVLVD AG DAS  F +VGHS
Sbjct: 4   KTITVEEVLKHNTRDDLYIVVKDKVYDISKFLDAHPGGEEVLVDLAGRDASGPFEDVGHS 63

Query: 193 EIAIEWRNTFKVGEIVDEE 249
           E A E    F +G ++  E
Sbjct: 64  EDAQELLEKFYIGNLLRTE 82


>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 147

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = +1

Query: 22  TRAEVAARDNNKQNLIIIDNVVYDVAAFLEDHPGGTEVLVDNAGSDASECF 174
           T+ E+A     +   I I   VY+V+A+L  HP G + ++D AG DA+  F
Sbjct: 75  TKEELAKHKTKEDCWIAIRGKVYNVSAYLPYHPAGQKRILDYAGRDATVIF 125


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 33.1 bits (72), Expect = 0.045
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = +1

Query: 64  LIIIDNVVYDVAAFLEDHPGGTEVLVDNAGSDASECFH--EVGHSEIAIEWRNTFKVGEI 237
           L++I+ VV+D+  F  +HPGG  +L    G DA+  F+     H+  A    +T++V  +
Sbjct: 375 LVLINGVVHDMTGF--EHPGGQGLLRSAFGKDATAAFNGGVYDHTNGAHNLLSTYRVAVV 432


>SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 145

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +1

Query: 22  TRAEVAARDNNKQNLIIIDNVVYDVAAFLEDHPGGTEVLVDNAGSDASE 168
           T  E+A   +     + I   VY+V A+L  HP G + ++ ++G DA++
Sbjct: 73  TAEELAKHCSPDDCWMAIRGKVYNVTAYLPYHPVGPKKILKHSGVDATK 121


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = -1

Query: 260 HFNFSSSTISPTLNVLRHSMAISLWPTSWKHSEASEPALSTRTSVPPGWSSRKAATSYTT 81
           H +   + +  T +  R    +S  P +  HS  SE  +STRTS  P  S   + T+++ 
Sbjct: 44  HQSLMDNLVDSTESTKRSENFVSHIPLTPSHSGQSEKLMSTRTSHSPYISPTMSYTNHSP 103

Query: 80  LSM 72
            ++
Sbjct: 104 ANL 106


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -1

Query: 182 TSWKHSEASEPALSTRTSVPPGWS--SRKAATSYTTLS 75
           +S +   A+EP+ ST T +PP +S  S   A+ Y+T S
Sbjct: 303 SSKREEAAAEPSSSTATDIPPPYSTPSVAGASDYSTPS 340


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
 Frame = -1

Query: 248 SSSTISPTLNVLRHSMAISLWPTSWKHSEASEPALSTRTSVPP---GWSSRKAATSYTTL 78
           SSS  S T +    S  +S    S   + +S  A+S+ TS+P      SS  + +S+T+L
Sbjct: 114 SSSAASSTTSTTSSSSLVS----STTLTSSSPSAVSSTTSIPSISSTISSSVSTSSFTSL 169

Query: 77  SMMIRFCLLLSRAATSAL 24
           S      +L S   TSAL
Sbjct: 170 SSSGFSTVLSSTNTTSAL 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,637,400
Number of Sequences: 5004
Number of extensions: 49533
Number of successful extensions: 153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)