Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0165.Seq
(764 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0743 + 6676906-6677007,6677160-6677226,6678246-6678529 69 5e-12
05_01_0065 + 461182-461271,462222-462288,462408-462664 68 9e-12
02_05_0137 - 26181793-26182055,26182172-26182238,26182392-26182478 63 2e-10
01_07_0340 + 42851330-42851413,42852179-42852245,42852336-42852592 63 2e-10
08_02_0958 - 23044708-23046045,23046131-23046363,23047059-230471... 60 1e-09
08_02_0956 + 23026108-23027146,23027255-23027395,23029334-230295... 60 1e-09
02_05_0889 - 32532495-32533832,32533919-32534151,32534321-325344... 57 2e-08
09_02_0530 + 10285844-10287217 39 0.005
07_01_0887 + 7380332-7380370,7381286-7381640,7382752-7382886,738... 36 0.027
09_02_0511 - 10079180-10079355,10079656-10079722,10080144-100801... 36 0.035
11_01_0686 - 5635207-5635323,5635483-5635644,5635727-5635822,563... 28 7.1
06_02_0046 + 10928708-10928798,10929997-10930077,10930567-109306... 28 9.4
03_05_1079 + 30222017-30222903,30222992-30223117,30223752-302238... 28 9.4
>12_01_0743 + 6676906-6677007,6677160-6677226,6678246-6678529
Length = 150
Score = 68.5 bits (160), Expect = 5e-12
Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Frame = +1
Query: 19 YTRAEVAARDNNKQNLIIIDNVVYDVAAFLEDHPGGTEVLVD-NAGSDASECFHEVGHSE 195
++ ++V + K ++I VYDV FLEDHPGG +VL+ +A DA+E F +VGHS
Sbjct: 13 FSASDVVGHASRKDCWVVIHGKVYDVTKFLEDHPGGEDVLLHASASGDATEAFEDVGHST 72
Query: 196 IAIEWRNTFKVGEIVD 243
AI N + +G I D
Sbjct: 73 SAISMMNNYLIGSIKD 88
>05_01_0065 + 461182-461271,462222-462288,462408-462664
Length = 137
Score = 67.7 bits (158), Expect = 9e-12
Identities = 32/73 (43%), Positives = 46/73 (63%)
Frame = +1
Query: 19 YTRAEVAARDNNKQNLIIIDNVVYDVAAFLEDHPGGTEVLVDNAGSDASECFHEVGHSEI 198
YT EVA ++ +II VY+V+ FLEDHPGG +VL+ + G DA++ F +VGHS
Sbjct: 9 YTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDVGHSTT 68
Query: 199 AIEWRNTFKVGEI 237
A + + VG+I
Sbjct: 69 ARAMMDEYYVGDI 81
>02_05_0137 - 26181793-26182055,26182172-26182238,26182392-26182478
Length = 138
Score = 63.3 bits (147), Expect = 2e-10
Identities = 29/73 (39%), Positives = 46/73 (63%)
Frame = +1
Query: 19 YTRAEVAARDNNKQNLIIIDNVVYDVAAFLEDHPGGTEVLVDNAGSDASECFHEVGHSEI 198
Y+ EV+ ++ K +II VYDV+ F+E+HPGG EVL+ G DA+ F+++GH+
Sbjct: 8 YSFQEVSKHNDRKDCWLIIAGKVYDVSPFMEEHPGGDEVLLACTGKDATADFNDIGHTAT 67
Query: 199 AIEWRNTFKVGEI 237
A E + +GE+
Sbjct: 68 AKELMPQYCIGEV 80
>01_07_0340 + 42851330-42851413,42852179-42852245,42852336-42852592
Length = 135
Score = 63.3 bits (147), Expect = 2e-10
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +1
Query: 4 MSVHKYTRAEVAARDNNKQNL-IIIDNVVYDVAAFLEDHPGGTEVLVDNAGSDASECFHE 180
MS +K E ++ N K + +II VY+V FLEDHPGG +VL+ + DA++ F +
Sbjct: 1 MSNNKVLTLEEVSKHNTKDDCWLIIGGKVYNVTKFLEDHPGGDDVLLSSTAKDATDDFED 60
Query: 181 VGHSEIAIEWRNTFKVGEI 237
VGHS A + + VG+I
Sbjct: 61 VGHSTTARAMMDEYYVGDI 79
>08_02_0958 -
23044708-23046045,23046131-23046363,23047059-23047199,
23047296-23048334
Length = 916
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/75 (36%), Positives = 47/75 (62%)
Frame = +1
Query: 16 KYTRAEVAARDNNKQNLIIIDNVVYDVAAFLEDHPGGTEVLVDNAGSDASECFHEVGHSE 195
++T +EV + I++ VYD AFL+DHPGG + ++ NAG+D +E F + HS+
Sbjct: 543 QFTMSEVRKHSSQDSAWIVVHGHVYDCTAFLKDHPGGADSILINAGTDCTEEFDAI-HSD 601
Query: 196 IAIEWRNTFKVGEIV 240
A +T+++GE++
Sbjct: 602 KAKALLDTYRIGELI 616
>08_02_0956 +
23026108-23027146,23027255-23027395,23029334-23029566,
23029652-23030989
Length = 916
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/75 (36%), Positives = 47/75 (62%)
Frame = +1
Query: 16 KYTRAEVAARDNNKQNLIIIDNVVYDVAAFLEDHPGGTEVLVDNAGSDASECFHEVGHSE 195
++T +EV + I++ VYD AFL+DHPGG + ++ NAG+D +E F + HS+
Sbjct: 543 QFTMSEVRKHSSQDSAWIVVHGHVYDCTAFLKDHPGGADSILINAGTDCTEEFDAI-HSD 601
Query: 196 IAIEWRNTFKVGEIV 240
A +T+++GE++
Sbjct: 602 KAKALLDTYRIGELI 616
>02_05_0889 -
32532495-32533832,32533919-32534151,32534321-32534461,
32534564-32535521
Length = 889
Score = 56.8 bits (131), Expect = 2e-08
Identities = 27/75 (36%), Positives = 44/75 (58%)
Frame = +1
Query: 16 KYTRAEVAARDNNKQNLIIIDNVVYDVAAFLEDHPGGTEVLVDNAGSDASECFHEVGHSE 195
+YT +EV + II+ VYD FL+DHPGG + ++ NAG+D +E F + HS+
Sbjct: 515 QYTMSEVRRHTTPESAWIIVHGHVYDCTGFLKDHPGGADSIMINAGTDCTEEFDAI-HSD 573
Query: 196 IAIEWRNTFKVGEIV 240
A +++GE++
Sbjct: 574 KARGLLEMYRIGELI 588
>09_02_0530 + 10285844-10287217
Length = 457
Score = 38.7 bits (86), Expect = 0.005
Identities = 26/78 (33%), Positives = 35/78 (44%)
Frame = +1
Query: 10 VHKYTRAEVAARDNNKQNLIIIDNVVYDVAAFLEDHPGGTEVLVDNAGSDASECFHEVGH 189
V + E+ A + I I VYDV A++ HPGG L+ AG DA++ F H
Sbjct: 16 VRMISSEELRAHASRDDLWISISGDVYDVTAWVPHHPGGDIPLLTLAGQDATDAF-AAYH 74
Query: 190 SEIAIEWRNTFKVGEIVD 243
A F VG + D
Sbjct: 75 PPSARPLLGRFLVGRLED 92
>07_01_0887 +
7380332-7380370,7381286-7381640,7382752-7382886,
7383029-7383138
Length = 212
Score = 36.3 bits (80), Expect = 0.027
Identities = 16/53 (30%), Positives = 34/53 (64%)
Frame = +1
Query: 70 IIDNVVYDVAAFLEDHPGGTEVLVDNAGSDASECFHEVGHSEIAIEWRNTFKV 228
++ VY++A +++ HPGG ++L+ AG D++ F + + + +++TFKV
Sbjct: 159 VLKGRVYNIAPYMKFHPGGVDMLMKAAGKDSTALFSIL----LLLLFKHTFKV 207
>09_02_0511 -
10079180-10079355,10079656-10079722,10080144-10080181,
10080255-10080336
Length = 120
Score = 35.9 bits (79), Expect = 0.035
Identities = 14/25 (56%), Positives = 22/25 (88%)
Frame = +1
Query: 82 VVYDVAAFLEDHPGGTEVLVDNAGS 156
+VYDV +++E+HPGG E+L +NAG+
Sbjct: 40 MVYDVTSYVEEHPGGDEIL-NNAGA 63
>11_01_0686 -
5635207-5635323,5635483-5635644,5635727-5635822,
5635903-5635964,5636046-5636121,5636201-5636283,
5636369-5636694,5637524-5637570,5637668-5637804,
5638064-5638097
Length = 379
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +3
Query: 258 VKCKQPSAAESAEPLTLGGLLAVYGPPVAMAVLAYLLYTFL 380
+KCK A E+A+PL + + PP AM V +L+T L
Sbjct: 8 IKCKAAVAWEAAKPLVIEEV--EVAPPQAMEVRVKILFTSL 46
>06_02_0046 +
10928708-10928798,10929997-10930077,10930567-10930685,
10931275-10931894,10931992-10933184,10933280-10933359,
10933751-10933846,10933931-10934004,10936007-10936151,
10936323-10936487
Length = 887
Score = 27.9 bits (59), Expect = 9.4
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = -1
Query: 248 SSSTISPTLNVLRHSMAISLWPTSWKHSEASEPALSTRTSVPPGWSSRKAATSYTTLSMM 69
SSS ++P + L + ++ K + S+P +T S SS +A+TS T+ S +
Sbjct: 643 SSSNLAPANSSLHSRESDNIISKEAKLASLSQPVGATSASASIQGSSAQASTSTTSQSKV 702
Query: 68 IR 63
+R
Sbjct: 703 VR 704
>03_05_1079 +
30222017-30222903,30222992-30223117,30223752-30223808,
30224883-30224913,30225159-30225236,30225297-30225383
Length = 421
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 432 PEVVLANSAHCTGRASRTGTCRAGTR 355
PE+ L CTGR +G C G+R
Sbjct: 264 PELGLMQRRRCTGREDGSGRCTTGSR 289
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,438,415
Number of Sequences: 37544
Number of extensions: 332321
Number of successful extensions: 921
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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