Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0165.Seq
(764 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3835| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23) 72 6e-13
SB_34578| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23) 72 6e-13
SB_23882| Best HMM Match : Cyt-b5 (HMM E-Value=9.2e-19) 50 3e-06
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0) 44 1e-04
SB_58806| Best HMM Match : Cyt-b5 (HMM E-Value=2.2e-20) 40 0.002
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34) 39 0.004
SB_31956| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_49983| Best HMM Match : Cyt-b5 (HMM E-Value=8.4e-12) 36 0.027
SB_46990| Best HMM Match : Keratin_B2 (HMM E-Value=4.6) 31 1.3
SB_36995| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_2333| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_4780| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0) 28 9.5
>SB_3835| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23)
Length = 109
Score = 71.7 bits (168), Expect = 6e-13
Identities = 34/78 (43%), Positives = 49/78 (62%)
Frame = +1
Query: 19 YTRAEVAARDNNKQNLIIIDNVVYDVAAFLEDHPGGTEVLVDNAGSDASECFHEVGHSEI 198
YT EV + ++I N V+DV FL++HPGG EVL++ AG DASE F +VGHS
Sbjct: 10 YTFDEVKNHNKAGGCWLVIHNKVFDVTKFLDEHPGGEEVLLEQAGGDASESFEDVGHSSD 69
Query: 199 AIEWRNTFKVGEIVDEEK 252
A E N + +GE+ + ++
Sbjct: 70 ARELMNEYCIGELREADR 87
>SB_34578| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23)
Length = 172
Score = 71.7 bits (168), Expect = 6e-13
Identities = 34/78 (43%), Positives = 49/78 (62%)
Frame = +1
Query: 19 YTRAEVAARDNNKQNLIIIDNVVYDVAAFLEDHPGGTEVLVDNAGSDASECFHEVGHSEI 198
YT EV + ++I N V+DV FL++HPGG EVL++ AG DASE F +VGHS
Sbjct: 10 YTFDEVKNHNKAGGCWLVIHNKVFDVTKFLDEHPGGEEVLLEQAGGDASESFEDVGHSSD 69
Query: 199 AIEWRNTFKVGEIVDEEK 252
A E N + +GE+ + ++
Sbjct: 70 ARELMNEYCIGELREADR 87
>SB_23882| Best HMM Match : Cyt-b5 (HMM E-Value=9.2e-19)
Length = 167
Score = 49.6 bits (113), Expect = 3e-06
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Frame = +1
Query: 19 YTRAEVAARDNNKQNLIIIDNVVYDVAAFLEDHPGGTEVLVDNAGSDASECFH--EV-GH 189
++R E+ ++ +I VYD++ F E HPGG +VL+ N+G D + E+ H
Sbjct: 10 FSREEIGRHKSDGDLWVIHSGKVYDISKFSERHPGGKDVLLLNSGQDVTSIMSNGEIHKH 69
Query: 190 SEIAIEWRNTFKVGEIVDE 246
S+IA W + +G + E
Sbjct: 70 SQIAYGWLKKYNIGRLQAE 88
>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
Length = 672
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Frame = +1
Query: 19 YTRAEVAARDNNKQNL-IIIDNVVYDVAAFLEDHPGGTEVLVDNAGS--DASECFHEVGH 189
Y++ EV+ +N K + + VYD+ F++ HPGGT ++ AG+ + + V
Sbjct: 204 YSKEEVSKHNNRKSRIWVTYKGGVYDITDFIDGHPGGTSKIILAAGAALEPYWAMYAVHK 263
Query: 190 SEIAIEWRNTFKVGEIVDEEKL 255
E +E +++G++ E+++
Sbjct: 264 KEEVLEILEEYRIGDLAHEDQV 285
>SB_58806| Best HMM Match : Cyt-b5 (HMM E-Value=2.2e-20)
Length = 142
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/80 (25%), Positives = 41/80 (51%)
Frame = +1
Query: 19 YTRAEVAARDNNKQNLIIIDNVVYDVAAFLEDHPGGTEVLVDNAGSDASECFHEVGHSEI 198
YT EV + +++++ VYD++ ++ HPGG ++ AG + ++ F + +
Sbjct: 13 YTLDEVKEHCSKGDCWVVVEDSVYDLSKWIGHHPGGELPILYMAGRECTDVFKAFHPAWV 72
Query: 199 AIEWRNTFKVGEIVDEEKLK 258
+ FK+G++ D K K
Sbjct: 73 FTKKLPAFKIGKLDDTRKEK 92
>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
Length = 1790
Score = 39.1 bits (87), Expect = 0.004
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = +1
Query: 67 IIIDNVVYDVAAFLEDHPGGTEVLVDNAGSDASECFHEVGHSEIAIEWRNTFKVGEIVDE 246
++I VYD+ F E+ P G +L A DA++ F E HS A VG V+E
Sbjct: 1247 VVIHGKVYDLKEFKEEAPCGESLLQKYAACDATKAFEEANHSYEARMMMQDHLVGTFVEE 1306
>SB_31956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 319
Score = 38.7 bits (86), Expect = 0.005
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 40 ARDNNKQNL-IIIDNVVYDVAAFLEDHPGGTEVLVDNAGSDASECF 174
+R N +QN + I VYDV FL HPGG E+L+ AG D + F
Sbjct: 31 SRLNTEQNAHLAIHGKVYDVTNFLLRHPGGKELLLIGAGRDVTLVF 76
>SB_49983| Best HMM Match : Cyt-b5 (HMM E-Value=8.4e-12)
Length = 303
Score = 36.3 bits (80), Expect = 0.027
Identities = 22/83 (26%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Frame = +1
Query: 19 YTRAEVAARDNNKQNL-IIIDNVVYDVAAFLEDHPGGTEVLVDNAGS--DASECFHEVGH 189
++ +EVA + + + ++ VYD+ F+E HPGG ++++ AGS D H+
Sbjct: 158 FSLSEVAKHTDARHGVWTTYEDGVYDLTDFIEQHPGGKKMIMLAAGSRLDPYWNIHDFHK 217
Query: 190 SEIAIEWRNTFKVGEIVDEEKLK 258
+ ++ + F++G + +EK+K
Sbjct: 218 RDDIVKILSEFRIGSL-RKEKIK 239
>SB_46990| Best HMM Match : Keratin_B2 (HMM E-Value=4.6)
Length = 782
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = -1
Query: 230 PTLNVLRHSMAISLWPTSWKHSEASEPALSTRTSVPPGW 114
P VL+ + A L T W+ SEA P S R S P GW
Sbjct: 283 PLSEVLQLTGATQL--TEWEFSEACHPYTSGRGSTPEGW 319
>SB_36995| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 574
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +2
Query: 599 DNIVVRRVT*INSPIFKITNILLILNTNFESNHYIIAQTT*TKFRVKLY 745
DNI++ V I I I I++I +++F +H+I+ T TK V L+
Sbjct: 85 DNIILINVVVITVDIIVIIVIIIIFSSSFSCHHHIVYSTI-TKTTVDLF 132
>SB_2333| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 467
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 19 YTRAEVAARDNNKQNLIIIDNVVYDVAAFLED--HPGGTEVLVDNAGSDASECFHEV 183
+ A A++ K L +D V +AA + D HPG T + NAGS+ + ++++
Sbjct: 206 HATAVFLAKERVKAVLEPLDEVASLIAAIVHDVDHPGYTNSFLCNAGSELAILYNDI 262
>SB_4780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 799
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/42 (42%), Positives = 20/42 (47%)
Frame = -1
Query: 230 PTLNVLRHSMAISLWPTSWKHSEASEPALSTRTSVPPGWSSR 105
P VL+ + AI L T W SEA P S RT V W R
Sbjct: 536 PLSEVLQLTGAIQL--TEWGFSEACHPYTSGRTRVTSPWPRR 575
>SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)
Length = 2726
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Frame = -1
Query: 245 SSTISPTLNVLRHSMAISLWPTSWKHSEASEPALSTRTS------VPPGWSSRKAATSYT 84
SS+I TL S A + SW +S P+LS+R S PPG ++ +++S+
Sbjct: 844 SSSIGSTL--ASQSTASASHIPSWSSLSSSFPSLSSRLSSASSSASPPGTTTSSSSSSFP 901
Query: 83 TLSM 72
+LS+
Sbjct: 902 SLSL 905
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,814,956
Number of Sequences: 59808
Number of extensions: 364455
Number of successful extensions: 985
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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