Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0163.Seq
         (720 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    26   0.35 
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    25   0.82 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   4.4  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      22   5.8  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -1

Query: 207  WASSPT*ESFWPIPTITPWWRGRPTMDGKTAR 112
            W + P+  ++W   T +PWW    T    T R
Sbjct: 1035 WTTKPS--TWWSSTTTSPWWTTTTTRRTTTTR 1064


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 247 ARYITNWDDMEKIWHHTFYNELRVAPEEHPVLLT 348
           A  +T+W + E+I++     +L V     PV+LT
Sbjct: 156 ANVVTDWVNFERIYYKLTKKKLSVFFGNKPVILT 189


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 499 DGVSTPYPSTKVTLCPTPSSVWTWLV 576
           DG ++P P  ++ + P P+ + + LV
Sbjct: 75  DGTTSPEPDPEIPVAPEPAPLASPLV 100


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 633 TTAEREIVRDIKEKLCYVASTSSRRWP 713
           T A+R + +  KEKL  +A +   +WP
Sbjct: 4   TGADRLMTQRCKEKLNTLAISVMNQWP 30


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,436
Number of Sequences: 336
Number of extensions: 3423
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)