Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0163.Seq
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.9  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   3.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.1  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    21   8.9  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   8.9  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 251 GTSPTGMTWRRSGTTPSTMS 310
           GT P  + WRR+G    T++
Sbjct: 336 GTPPPPLVWRRNGADLETLN 355


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 310  LRVAPEEHPVLLTEAPLNPKANREKM 387
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 318 DTQLIVEGVVPDLLHVI 268
           + Q +V+ V PD+LH+I
Sbjct: 21  NNQTVVDKVPPDMLHLI 37


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -2

Query: 671 LLDVTNDFPLSGGGERVTPLGEDLHEVVGQVATSQVQTEDGVGQS 537
           ++D+T     S  G+ V     +L+ +VG  A   +  E+G G +
Sbjct: 18  MVDLTQCLQESSTGQSVEFSPMELNALVGTPAAPNMPAEEGEGMA 62


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = -2

Query: 485 TIPVVRPEAYSESTAWMATYMAGELKVSNMIWVIFSL 375
           T+P  + E   +  AWM     G L+  N  +  F +
Sbjct: 33  TLPGYKIECVGDDIAWMKFDKEGRLRAINPEYGFFGV 69


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 74  GMCKAGFAGD 103
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,492
Number of Sequences: 438
Number of extensions: 3907
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)